Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 156 5e-33 seq281 82.4 9e-11 >seq5 Length=391144 Score = 156 bits (172), Expect = 5e-33 Identities = 300/436 (69%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| || || || ||||| |||||||| | || ||||| ||||| ||| Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaa 93207 | ||| || | ||||| | || || | |||||| ||||| ||| || | || || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGAA 174627 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-- 93265 ||| || ||||| || || |||||||| | || ||||| | ||| | || || | Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAG---GAGGCATAAGC 174684 Query 93266 CTG--CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | ||| |||||| | ||||| || || || || | ||| || | |||| || Sbjct 174685 CGGATCTG-TCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGA 174743 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | ||||| || |||| ||| ||| | | |||| ||||| || ||||| | || | Sbjct 174744 TTGCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTG 174803 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 |||| | ||||||||||| || |||| || |||||||| ||||||||||| | ||||| Sbjct 174804 AATAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTT 174863 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | | || ||||| | ||| | || ||||||| || || || ||||||||| Sbjct 174864 CAGGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGC 174923 Query 93504 ATGCTGCaaaaaaaGC 93519 ||| ||||| ||||| Sbjct 174924 TTGCAGCAAAGAAAGC 174939 >seq281 Length=152016 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 93368 GTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCG 93427 || ||||| | || ||||| | ||||||||||| || |||| || |||||||| ||| Sbjct 65430 GTGTCGATGAGGAGTGAATAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCG 65489 Query 93428 TAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCA 93487 |||||||| | |||||| | | || ||||| | ||| | || ||||||| || Sbjct 65490 TAGAAACAGCGAGCTTCAGGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCG 65549 Query 93488 TTGACTATACCATCG 93502 || || ||||||||| Sbjct 65550 TTCACAATACCATCG 65564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556804710195920