Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3664 123 2e-23 seq218 123 2e-23 seq1217 86.0 5e-12 >seq3664 Length=1078 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || ||||| || || |||| | || |||||| | | Sbjct 624 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 683 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||||| ||||| || || ||||| || ||||| || ||||| Sbjct 684 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 743 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || || || || ||| || || | || || ||||| Sbjct 744 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 803 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || || || ||||| | || || ||| Sbjct 804 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGT 851 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || ||||| || || |||| | || |||||| | | Sbjct 852 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 911 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||||| ||||| || || ||||| || ||||| || ||||| Sbjct 912 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 971 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || || || || ||| || || | || || ||||| Sbjct 972 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 1031 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || ||||| || | || || || ||||| Sbjct 1032 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCG 1066 >seq218 Length=95557 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || || |||| || || |||||| | | Sbjct 87158 ATGCAAATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 87217 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||||| ||||| || || ||||| || ||||| || ||||| Sbjct 87218 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87277 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || || || || ||| || || | || || ||||| Sbjct 87278 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 87337 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || || || ||||| | || || ||| Sbjct 87338 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGT 87385 >seq1217 Length=25202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 220/332 (66%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||| | || || || || ||| || ||| |||||||||| |||||| | ||| Sbjct 14073 AATATTTAGGGACTGGCTCTGGCAAATGAACGGGGCGCGATCGGCCGCCATATCCAGAAT 14132 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 |||| | |||| ||||||||| |||||||| | ||| ||| | | || | Sbjct 14133 GCTCTTTTGC---TTCACTTCCCACACGGTTTTGTACAATTCTTTCAGCTCGTCCGGCAC 14189 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 | || |||||||| ||| || ||||||||||| | || || || | | | | Sbjct 14190 GACGTCGATGTTCTGAACGGATCCCTTGTTTGCAATCAGTTGATTCCGGACC--TCAGCA 14247 Query 129087 GTACAAATTC--AGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||| ||| || ||||| | | || || |||||||| ||| || Sbjct 14248 GTCCAAATTCCTCGTTCAATGAAATCTTTGAGCATGTGTTTGTTTACGCAGGCAAATTCT 14307 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||| || | ||| |||||| ||||||| ||||||| || ||||| Sbjct 14308 CCAGCAAGAACCCGTCTCGTGTATATGTTGCTGGTGAAGGGCTCAATGCTCTCGTTGTTA 14367 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCAT 129236 || | ||||| || || | || || ||||| Sbjct 14368 CCGAGGATTTGGGCAGTGCTAGCAGTAGGCAT 14399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419686779824770