Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq146 134 3e-26 seq7408 95.1 2e-14 >seq146 Length=179389 Score = 134 bits (148), Expect = 3e-26 Identities = 267/387 (69%), Gaps = 14/387 (4%) Strand=Plus/Plus Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT-GCCGCATTCAAGCGGAACCTGGT 218645 ||||| || ||||| | ||||| || | ||||| | || ||||| |||||| | Sbjct 61280 GATGGACTGAAGCCTGCACAGCGGAAAGTTCTCTTCAGTTGC-TTCAAACGGAACTTAAA 61338 Query 218646 TCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCA 218705 ||||||| ||||| |||||| || |||||||||| || || | ||| |||||| || Sbjct 61339 GAAAGAAATCAAGGTTGCTCAGCTTGCTGGTTATGTTTCGGAGCATGCTGCCTACCACCA 61398 Query 218706 CGGTGAGCAGAGTCTGCAGGGTGCCATT---GTAGGCATGGCACAGGACTATGTGGGCAG 218762 || || | ||| | | ||| | | || || ||||| ||| | | ||| || Sbjct 61399 TGGCGA--AATGTCA-CTTGCTGCAACTATCGTTGGGATGGCGCAGAATTTTGTAGGATC 61455 Query 218763 TAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAA 218822 |||||| ||||| ||||| | || ||||||||||||| | || || ||||||| || Sbjct 61456 CAACAACCTGAACCTGCTGGTACCATCCGGTCAGTTTGGTACACGCCTGATGGGTGGTAA 61515 Query 218823 GGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTT 218882 ||| || ||| | |||||||||||||| |||||||| ||| | ||||| | | || Sbjct 61516 AGATGCCGCCTCTTCGAGGTATATCTTTACGAAGTTGTCTCCCATTACGCG--AACTATT 61573 Query 218883 CAATCAGGCCGATGATG---TGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGA 218939 ||| ||||||| | | | ||| |||| || || ||||| | ||||| Sbjct 61574 -TTTCATCCCGATGACGACCCGTTACTTTCGTATTACGAAGAAGATGGACGTAGCATTGA 61632 Query 218940 GCCCGAGTGGTATGTGCCTGCTATTCC 218966 ||| ||||||||| | || | ||||| Sbjct 61633 GCCTGAGTGGTATCTTCCCGTAATTCC 61659 >seq7408 Length=549 Score = 95.1 bits (104), Expect = 2e-14 Identities = 206/304 (68%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 218669 TTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTG 218728 || |||||||||| || || | ||| |||||| || || || | ||| | | || Sbjct 3 TTGCTGGTTATGTTTCGGAGCATGCTGCCTACCACCATGGCGA--AATGTCA-CTTGCTG 59 Query 218729 CCATT---GTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCC 218785 | | | || || ||||| ||| | | ||| || |||||| ||||| ||||| | | Sbjct 60 CAACTATCGTTGGGATGGCGCAGAATTTTGTAGGATCCAACAACCTGAACCTGCTGGTAC 119 Query 218786 CCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATA 218845 | ||||||||||||| | || | ||||||| || ||| || ||| | ||||||| Sbjct 120 CATCCGGTCAGTTTGGTACACGCTTGATGGGTGGTAAAGATGCCGCCTCTTCGAGGTATA 179 Query 218846 TCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATG---TGC 218902 ||||||| |||||||| ||| | || || | ||| ||| ||||||| | | Sbjct 180 TCTTTACGAAGTTGTCTCCCATTACCCGAACTATTTTCCATC---CCGATGACGACCCGT 236 Query 218903 TCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTA 218962 | ||| |||| || || ||||| | |||||||| ||||||||| | || | | Sbjct 237 TACTTTCGTATTACGAAGAAGATGGGCGTAGCATTGAGCCTGAGTGGTATCTTCCCGTAA 296 Query 218963 TTCC 218966 |||| Sbjct 297 TTCC 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027730682916778