Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq295 165 2e-35 seq7 150 3e-31 seq218 136 7e-27 seq826 132 9e-26 seq3664 127 4e-24 seq250 125 1e-23 seq2397 123 5e-23 seq2349 123 5e-23 seq80 120 6e-22 seq3592 114 2e-20 seq304 89.7 9e-13 >seq295 Length=301924 Score = 165 bits (182), Expect = 2e-35 Identities = 340/506 (67%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 268223 ACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGC 268282 ||| |||||||||| | | ||| |||||| |||||| | || | |||||| Sbjct 78313 ACATAGTCCTCTGGTTGATCTTGCTGCAGCATTAACCACATACCCTCTATGTAGTCCTTT 78254 Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 || || ||||| || || || |||| || ||| ||||| ||| || |||||||||| Sbjct 78253 GCGTGACCCCAGTCTCGTTTCGCGTTCAGGTTTCCGAGATACACTGTTTGCTGCTTGCCG 78194 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | | || || | | ||||| ||||| | ||||| |||||| || | | | Sbjct 78193 AGGTGAATTCGCGCCACGGCACGAGTAATTTTCCTAGTCACAAACGTCGGACCCCTTCTA 78134 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 ||| ||||| ||||| || || || || || || |||||| ||||| || | |||| Sbjct 78133 GGGGATTCGTGATTGAACAGAATACCATTACATGCAAACATGTTGTATGCTTCTCTGTAG 78074 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 || | | ||||| | | ||| || || || ||||| ||||| || |||| ||| Sbjct 78073 TTGATTATGTTCCAGAAGCCGAACTGTTTGGCTACGGCGTAAGGAGAGCGCGGATAGAAC 78014 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCT 268582 || ||| | ||||||| || ||| ||||||||||| | || || || |||||| Sbjct 78013 GGTGTCTTTTCGGTTTGAGGAATCTCTTGGACTTTGCCATACAGTTCACTCGTAGATGCT 77954 Query 268583 TGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGA 268642 || || || | | | ||||||||||| | | ||| | || | | |||| Sbjct 77953 TGATAAAATCGACACTTATCTCCGAGACCGCAGGCTAACAGTGCATTAAGAAGTCTAAGA 77894 Query 268643 GTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGG 268702 || || | |||| |||| ||||| ||||| ||| ||||| || ||| ||||| Sbjct 77893 GTCCCAAGAGCATCAACGTTGGCTGTGTACTCGCTCATTTCGAACGAGACCATCACATGA 77834 Query 268703 CTCTGGGCGCCCAGGTTATAAACCTC 268728 || ||||| ||| ||| || ||||| Sbjct 77833 CTTTGGGCTGCCAAGTTGTACACCTC 77808 >seq7 Length=130303 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| ||||| || | || || || || |||||||| || |||||| Sbjct 35911 CCACCACGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 35852 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||||||| ||||| ||||| ||||| || || || || Sbjct 35851 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGG 35792 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || || || ||| ||| |||||| ||||| | | ||| || Sbjct 35791 ATGCCTTCTTTGTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACA 35732 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 || | |||||||||||| || ||||| |||| Sbjct 35731 TCGAGGGTGATGGTTTTACCAGTGAGAGTCT 35701 >seq218 Length=95557 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || ||||| |||||||| || || || || || || || || || || || Sbjct 87613 TCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 87554 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||||||||| |||||||| || || || || | ||| || || || || Sbjct 87553 AAGAGTTCGACCATCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 87494 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||| || || || || ||||| ||| || ||||| | | ||| || Sbjct 87493 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCAC 87434 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || | |||||||| || |||||||| Sbjct 87433 ATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq826 Length=494 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || ||||| |||||||| || || || || || || || || || || || Sbjct 459 TCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 400 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| || ||||| || || || || || | ||| || || || || Sbjct 399 AAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 340 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||| || || || || ||||| ||| || ||||| | | ||| || Sbjct 339 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCAC 280 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || | |||||||| || |||||||| Sbjct 279 ATCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAGATCTGCAT 232 >seq3664 Length=1078 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || || || || || || || || || || Sbjct 850 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 791 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || || || || || | ||| || || || ||| Sbjct 790 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 731 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || || || ||||| ||| || ||||| | | ||| || Sbjct 730 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 671 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| || || || | |||||||| || || |||||| Sbjct 670 TCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTGCATT 623 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || || || || || || || || || || Sbjct 1078 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 1019 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || || || || || | ||| || || || ||| Sbjct 1018 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 959 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || || || ||||| ||| || ||||| | | ||| || Sbjct 958 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACA 899 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || | |||||||| || || ||||| Sbjct 898 TCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTGCAT 852 >seq250 Length=105897 Score = 125 bits (138), Expect = 1e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||| || || ||||| || || ||||| || || ||||| Sbjct 9424 CCACCACGGAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAA 9483 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| || ||||| || | || || || || |||||| Sbjct 9484 AGAGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGA 9543 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || |||||| ||||||||||| | | ||| || Sbjct 9544 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTTTCGATGGTGTCAGAAGCTTCCACA 9603 Query 68415 TCCAAGGTGATGGT 68428 |||| |||||||| Sbjct 9604 TCCAGAGTGATGGT 9617 >seq2397 Length=4497 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || ||||||| || || || || || || || || ||||| || ||||| || Sbjct 2003 TCCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGA 1944 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || || ||||| || || || || | || || || || || || Sbjct 1943 CAGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGG 1884 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| |||||||| || || || || ||| ||||| || | | ||| || Sbjct 1883 AATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCAC 1824 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||||||||||||| || || || ||||||||||| Sbjct 1823 ATCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 1788 >seq2349 Length=20186 Score = 123 bits (136), Expect = 5e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| | ||||||||||| ||||||||||||||||| Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| || || || || |||||||| | || || || || || || Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || || || || ||| ||| ||||| || | | || || Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCACA 7649 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 |||| |||||||| || || || | |||| Sbjct 7650 TCCAGTGTGATGGTCTTGCCGGTCAAAGTCT 7680 >seq80 Length=198448 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || ||||||| || || || || || || || || ||||| || ||||| || Sbjct 77002 TCCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGA 77061 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || || || || || || || || | || || || || || || Sbjct 77062 TAGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGG 77121 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| |||||||| || || || || ||| ||||| || | | ||| || Sbjct 77122 AATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCAC 77181 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||||||||||||| || || || ||||||||||| Sbjct 77182 ATCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 77217 >seq3592 Length=385 Score = 114 bits (126), Expect = 2e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68256 AAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAAC 68315 ||||| || || || || || || || || || || || || || | |||||||| || Sbjct 385 AAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAAT 326 Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||||| || || || || || | ||| || || || ||||| |||||||| || || || Sbjct 325 TGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATT 266 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || ||||| ||| || ||||| | | ||| || |||||||||||||| || || Sbjct 265 TTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCCCA 206 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || |||||||| Sbjct 205 GTCAAAGTCTTGACAAAGATCTGCAT 180 >seq304 Length=68045 Score = 89.7 bits (98), Expect = 9e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 172983 TGGACTACTGCGCGACCCTGAACAACCTGGCAACAGTTCGAGA-TGCTCCCAATTTCAAG 173041 ||||||||||||| ||| || ||||| | || | || ||| ||| || |||| |||| Sbjct 41493 TGGACTACTGCGCTTGCCTCAAAAACCTTG-AAGAAATCAAGAATGCACCGAATTACAAG 41435 Query 173042 TTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCTGAAGCAGGAAAAA 173101 ||||||||||| ||||||| ||| || ||| | | | | ||| |||| | Sbjct 41434 TTCGTCAAGGGCGATATTCGGTCTCAAGACCTCGTACTTTATCTGTTCAAGACGGAAGAG 41375 Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGT 173139 ||||| ||| | |||||||||||||| || |||||||| Sbjct 41374 ATTGATACGGTGATGCACTTTGCTGCTCAAACCCATGT 41337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921529569583760