Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2397 109 5e-19 seq2100 104 2e-17 seq80 104 2e-17 seq2349 102 7e-17 seq3538 96.9 3e-15 seq218 95.1 1e-14 seq1543 84.2 2e-11 seq7 84.2 2e-11 >seq2397 Length=4497 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || |||||||| | |||||||| || || || |||||||| | Sbjct 2002 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAC 1943 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||| || | ||| || ||||| | || | ||||| || ||||||||| Sbjct 1942 AGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGA 1883 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||||||||| || || ||||| | | |||| ||| || | || ||| || Sbjct 1882 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 1823 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 |||| ||| | || || || || || || || || Sbjct 1822 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 1788 >seq2100 Length=597 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | ||| || || || | || ||||| || ||||| ||||| || Sbjct 397 ATACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCA 338 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| |||||| | ||| || || || | || ||||| || || || ||| Sbjct 337 GAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGA 278 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || ||||| | | |||| ||||| | | ||| Sbjct 277 GGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCC 218 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| ||| || |||||||||||||| Sbjct 217 ACATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq80 Length=198448 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || |||||||| | |||||||| || || || |||||||| Sbjct 77003 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAT 77062 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||| || | |||||| ||||| | || | ||||| || || |||||| Sbjct 77063 AGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 77122 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||||||||| || || ||||| | | |||| ||| || | || ||| || Sbjct 77123 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 77182 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 |||| ||| | || || || || || || || || Sbjct 77183 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 77217 >seq2349 Length=20186 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||| |||||| || |||||| |||||| | |||||||||| Sbjct 7500 GTGGACTCTTTCTGGATGTTATAATCGGACAAAGTACGCCCATCTTCCAATTGTTTACCA 7559 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | ||||| || |||||||| |||||||| || || || || ||||| Sbjct 7560 GCGAATATCAATCGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGGATTTTCTGTTTC 7619 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||| || | || || || |||| || | || |||||||||| ||| Sbjct 7620 ACGTTCTCAATGGTATCAGAGGCCTCCACATCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq3538 Length=489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | ||| || || || | || ||||| || ||||| ||||| || Sbjct 205 ATACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCA 264 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| |||||| | ||| || || || | || ||||| || || || ||| Sbjct 265 GAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGA 324 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || ||||| | | ||| ||||| | | ||| Sbjct 325 GGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTTCC 384 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| || || |||||||||||||| Sbjct 385 ACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||| ||||| || | ||| ||| |||||| | ||| || || Sbjct 10 GTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCC 69 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || ||||| || || || |||||||| ||||| || || || || ||||| Sbjct 70 GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTG 129 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||| || |||| ||| | || || || |||| || Sbjct 130 ACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAATGTC 189 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 190 TTGACAAAAATCTGCAT 206 >seq218 Length=95557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || || | ||| || || || | || ||||| || ||||| ||||| || Sbjct 87612 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 87553 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| ||| |||||| | ||| || || || | || ||||| || || || |||||| Sbjct 87552 AGAGTTCGACCATCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 87493 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || || || ||||| | | |||| ||||| | | ||| || Sbjct 87492 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 87433 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || || || |||| || || |||||||||||||| Sbjct 87432 TCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq1543 Length=600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 114199 GAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGAC 114258 |||| ||||| || | ||| ||| |||||| | ||| || || || | || |||| Sbjct 1 GAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGAC 60 Query 114259 GCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGG 114318 | || || || |||||||| ||||| || || || || ||||| | | |||| | Sbjct 61 GTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCG 120 Query 114319 TGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 114378 |||| | | ||| || |||| ||| | || || || |||| ||| || |||||||||| Sbjct 121 TGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCT 180 Query 114379 GCAT 114382 |||| Sbjct 181 GCAT 184 >seq7 Length=130303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | ||| || ||||| | || ||||| || || |||||||| ||| Sbjct 35911 CCACCACGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 35852 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||||| || || || || ||| | ||||| | || || || || || Sbjct 35851 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGG 35792 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||||||||| || || || || | | || | ||||||| || ||| || Sbjct 35791 ATGCCTTCTTTGTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACA 35732 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 || | ||| | ||||| || || ||||| Sbjct 35731 TCGAGGGTGATGGTTTTACCAGTGAGAGT 35703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420093139913496