Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1217 127 4e-24 >seq1217 Length=25202 Score = 127 bits (140), Expect = 4e-24 Identities = 469/724 (65%), Gaps = 32/724 (4%) Strand=Plus/Plus Query 244102 AAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTC 244161 ||| ||||| | || || || | | ||| | ||||||| ||| ||||| |||||||| Sbjct 14301 AAATTCTCCAGCAAGAACCCGTCTCGTGTATATGTTGCTGGTGAAGGGCTCAATGCTCTC 14360 Query 244162 CGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTT 244221 |||| || || || || || ||||| ||||| ||||| || | ||| |||||| ||| Sbjct 14361 GTTGTTACCGAGGATTTGGGCAGTGCTAGCAGTAGGCATCGGTGCCACAAGCAGAGAGTT 14420 Query 244222 CCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAG 244279 ||||| ||| | || | ||| | || |||| | ||||||||| || | || Sbjct 14421 CCTCATGCCATTAG-CTCGTAGCG-ATTCCCTGAGGGAGCCCCAGTCCCATCTGTCGGA- 14477 Query 244280 AGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTG 244339 || | ||| ||||| | |||||| || | | ||| | ||| |||| Sbjct 14478 -------CG-GAGTGACTCCCCATAGGTCAAATTGGAACTTCCCTTGGCTTGCGGGCGAT 14529 Query 244340 CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAG-GGC 244398 || || || || | ||||| || || || |||| | | | || || ||| Sbjct 14530 CCTTCATAAGTGGCATAGGGTCCCTCTTCGGCAGCAAGCTCA-ATAGATTGTGAAGCGGC 14588 Query 244399 GGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--G 244456 ||||||| || ||||| ||||| ||||||| || || | | ||| | | Sbjct 14589 TCCGTAGTAAATTGTCTCAAAGATTTCTTTGTTCAGCATTCGAGCTT--CTTCAGATTCG 14646 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 || ||| |||||||| || |||| ||| || || || ||||| || ||||| || || Sbjct 14647 AATGGGTAGCCCATCAGCAAGAAGCAGTCAGCAAGGCCTTGCACACCAATGCCAATTGGG 14706 Query 244517 CTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | || ||| |||||||| || || || ||||||| || || | || || || || Sbjct 14707 CGATGACGCATGTTGGAGTTGCGTGCCT-CGGGCACAGGATAGTAATTCAGATCAATGAC 14765 Query 244576 CTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTC 244635 | ||| || ||||| |||| | | || || ||| ||| | ||| | | Sbjct 14766 TTGGTTCAGATTGCGCGTGACGACCCTTGTAACATCCTTCAGATGCTCATGGTCAAAAT- 14824 Query 244636 GTAGGGATCCTCGGCGATGGTGATCCTC----ACAAACTCGTTGAGGGCGACGCTGGCCA 244691 || || | || | ||| || |||||| || ||||| | |||||| | Sbjct 14825 ------ATGTCCGACCATCCTCATCTTCTTGCACAAACATATTCAGGGCAATGCTGGCAA 14878 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 | |||||||| || ||| || | |||||||| ||||| ||||| || | ||| Sbjct 14879 GATTGCAGACTGCTGTCTCATCTGGAGCGGTGTACTCTACAATTTCGGTACACAAGTTGG 14938 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 ||||||||| || || || | || |||||| || || ||||| | |||||||||| Sbjct 14939 AGCACTTGATTGTACCAAGATTTTGTTGATTGCTTTTCGCATTGCACGAATCCTTGTAGA 14998 Query 244812 GCAT 244815 |||| Sbjct 14999 GCAT 15002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944244081434080