Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1217 118 1e-21 seq5 116 4e-21 >seq1217 Length=25202 Score = 118 bits (130), Expect = 1e-21 Identities = 477/735 (65%), Gaps = 35/735 (5%) Strand=Plus/Plus Query 113933 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 113992 |||||| || || ||| | ||| | ||||||| || ||| |||||||| | ||||||| Sbjct 14320 CGTCTCGTGTATATGTTGCTGGTGAAGGGCTCAATGCTCTCGTTGTTACCGAGGATTTGG 14379 Query 113993 GCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTA 114052 || ||| || || ||||| ||||||| || || ||| | | || || | | Sbjct 14380 GCAGTGCTAGCAGTAGGCATCGGTGCCACAAGCAGAGAGTTCCTCATGCCATTAGCTCGT 14439 Query 114053 ATGCG-TTCCTTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACAT 114108 | ||| |||| |||||| | ||||||| | || | | || | ||| || | Sbjct 14440 A-GCGATTCCCTGAGGGAGCCCCAGTCCCATCTGTCGGACGGAGTGACTCCC---CATAG 14495 Query 114109 ATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTC 114168 ||||| |||| | |||||| || |||||||| ||| | || | || || ||||| Sbjct 14496 GTCAAATTGGAACTTCCCTTGGCTTGCGGGCGATCCTTCATAAGTGGCATAGGGTCCCTC 14555 Query 114169 AACCTCCGCCAATTCGG-AGCTCGCCTCGAG-GGCTGCGTGATACATTGTCTCAAAAATG 114226 | | || | || || | | | || |||| ||| || ||||||||||| || Sbjct 14556 TTCGGCAGCAAGCTCAATAGATTG--TGAAGCGGCTCCGTAGTAAATTGTCTCAAAGATT 14613 Query 114227 CGAGCATTCATTGCCTTGG--CCTCGTCGGAATCAAACGCG-AGTCGGCACAAAATAAAT 114283 |||| || || | | || || || || || | | || | || | | | Sbjct 14614 TCTTTGTTCA--GCATTCGAGCTTCTTCAGATTCGAATGGGTAGCC--CATCAGCAAGAA 14669 Query 114284 ACA-TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 || || || || ||||| ||||| | ||||||||||||||| | ||| || || || || Sbjct 14670 GCAGTCAGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGCATGTTGGAGTTGCG 14729 Query 114343 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || ||| ||| ||||| ||||| ||| || || || ||||| ||||| Sbjct 14730 TGC---CTCGGGCACAGGATAGTAATTCAGATCAATGACTTGGTTCAGATTGCGCGTGAC 14786 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA---CTGCGA--GTC----TCTTC 114450 ||| |||| | || | || | || | |||||| | ||| || ||||| Sbjct 14787 GACCCTTGTAACATCCTTCAGATGCTCATGGTCAAAATATGTCCGACCATCCTCATCTTC 14846 Query 114451 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 114510 | ||| || || ||||| || || ||||| || || | |||||||| | | Sbjct 14847 TTGCACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGC 14906 Query 114511 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 114570 |||||||||| |||||| |||||||| || || | ||| || || || | || | ||| Sbjct 14907 GGTGTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTG 14966 Query 114571 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 ||| || | || |||| ||||||||| ||||| || || || || || || |||| Sbjct 14967 ATTGCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTG 15026 Query 114631 GGACTTGAGAATAGC 114645 || | || ||||| Sbjct 15027 AGAATCCAGTATAGC 15041 >seq5 Length=391144 Score = 116 bits (128), Expect = 4e-21 Identities = 284/425 (67%), Gaps = 14/425 (3%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || || ||||| | ||| || | |||||| |||||||| || || ||||| || ||| Sbjct 174527 TGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAGAGACCAGGCATAAGTCCC 174586 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 | ||| || | ||| || || | || |||||||||||||| |||||||| || ||| Sbjct 174587 CTCTTTTTTATCCAAAAGATTGAGCAGAATGAACCCGAGAAAAAGATTCCTTCAACAGCA 174646 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 || || |||| | || |||| ||||||| | | || ||| | || |||| Sbjct 174647 GCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCGGATCTGTCCATTGCAGCGCC 174706 Query 126239 CACTGCGCCTT---TTTCTCGATACACGGGACGGTCTGGATCGC-TTCAAA--GAGTTCC 126292 || | ||||| |||| | ||| |||| ||| ||||| || || ||| | | || Sbjct 174707 CAGTCTGCCTTCCGTTTC---ACACAGGGGATGGTTTGGATTGCGTTGAAAAGGTGGTCT 174763 Query 126293 TTCT-TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 126351 |||| ||||| |||||| ||||| | || ||||| |||||| ||| || Sbjct 174764 TTCTCTTTCT----TATCTTTAATGTAAGTGTCGATGAGGAGTGAATAGACTTCAGAATG 174819 Query 126352 GACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 126411 || |||| | | || | |||||||| |||| ||||| | ||||| || Sbjct 174820 GATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAGGCACTTGTACTTC 174879 Query 126412 ATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 126471 |||||| || | | || |||||| ||||| |||||| ||||||| || || Sbjct 174880 GCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTGCAGCAAAGAAAGC 174939 Query 126472 CAGGA 126476 |||| Sbjct 174940 AAGGA 174944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597293431558640