Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1217 118 1e-21 >seq1217 Length=25202 Score = 118 bits (130), Expect = 1e-21 Identities = 222/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || |||||||||| || || ||| ||| ||||||| || ||| || Sbjct 15744 GCTACGCCAACATTGTTCAACGCCGGCACTGAAAAGCCCCAGCTGTCTTCTTGCTTCTTG 15685 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 |||||| ||| ||||| || ||||| | ||| | || || ||||| Sbjct 15684 CTGACGATGAAGAGTGACTCGATTGAAGGAATCTACGATACACTAAAAAGTTGTGCATGT 15625 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTG-TCCACGACGTACGTGCCAGGGGTTC 94070 || || || || ||||| ||||||||| | || | | ||| || | ||| | | | | || Sbjct 15624 ATTTCCAAGTATGCGGGCGGAATCGGGTT-AGCGATTCACAACATTCGTTCTACGAGCTC 15566 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||| || || || || || ||||| || || |||| ||||||||||| || || | Sbjct 15565 TTACATTCGGGGAACGAACGGTACCTCGAATGGGATCGTGCCTATGCTCCGTGTGTTTAG 15506 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 || | || | ||||| || || ||||| || | | | ||||| || || || | || Sbjct 15505 TGACACCGCCAGATACGTTGATCAAGGTGGAGGCAAGCGCAAGGGGTCGTTTGCCATTTA 15446 Query 94191 TCTCGAGCCCTGGCACGCGGACGT 94214 ||| || || |||||||| ||||| Sbjct 15445 TCTGGAACCTTGGCACGCTGACGT 15422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494673369005680