Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq218 96.9 3e-15 seq2100 95.1 1e-14 seq1217 95.1 1e-14 seq7 93.3 4e-14 seq3538 87.8 2e-12 >seq218 Length=95557 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || ||||| | |||||| || || || | |||| ||||| ||||| |||||||| Sbjct 87616 GCATCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTC 87557 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | ||| || || || | ||| || || | | | || ||||| || || || || Sbjct 87556 AGAAAGAGTTCGACCATCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGG 87497 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 ||| || ||||| || || |||||| ||||| | | || | ||||| | || || Sbjct 87496 AGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTC 87437 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || | || | || || ||||||| || || |||||||||||||| Sbjct 87436 CACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq2100 Length=597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||||| || || || | | || ||||| ||||| |||||||| Sbjct 394 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 335 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||| || || | | | || ||||| || || || ||||| Sbjct 334 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 275 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| ||||| | | || | ||||| | || ||||| Sbjct 274 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 215 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || |||||||||||||| Sbjct 214 TCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq1217 Length=25202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 603/956 (63%), Gaps = 33/956 (3%) Strand=Plus/Plus Query 152823 GATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCC 152882 || |||||||| ||||| | | || ||||||||||| || | |||| ||| | Sbjct 14083 GACTGGCTCTGGCAAATGAACGGGGCGCGATCGGCCGCCATATCCAGAATGCTCTTTTGC 14142 Query 152883 TTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTA-TCCGGTATACCTTCAATGTT 152941 |||| ||||| ||||||||||||| | ||| | ||| ||||| | | || ||||| Sbjct 14143 TTCACTTCCCACACGGTTTTGTACAATTCTTTCA-GCTCGTCCGGCACGACGTCGATGTT 14201 Query 152942 CTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCA- 153000 ||||| || ||||||| ||||| | || || | || | || | | ||| Sbjct 14202 CTGAACGGATCCCTTGTTTGCAATCAGTTGATTCCGGACCTCAGCAGTCCAAA--TTCCT 14259 Query 153001 -GTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACT 153059 ||| ||||| || | || || || | ||| || ||| || || || | || Sbjct 14260 CGTTCAATGAAATCTTTGAGCATGTGTTTGTTTACGCAGGCAAATTCTCCAGCAAGAACC 14319 Query 153060 CGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGA 153119 |||||| |||| ||||| ||||| || |||| | ||||| || || || ||||| Sbjct 14320 CGTCTCGTGTATATGTTGCTGGTGAAGGGCTCAATGCTCTCGTTGTTACCGAGGATTTGG 14379 Query 153120 GCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA 153179 || ||| | || || ||||| ||||| | || ||| |||| || ||| | ||||| Sbjct 14380 GCAGTGCTAGCAGTAGGCATCGGTGCCACAAGCAGAGAGTTCCTCATGCCATTAGCTCGT 14439 Query 153180 ATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCG 153239 | ||| | | | ||| ||||| | ||||| || | ||| | ||| Sbjct 14440 AGCGATTCCCTGAGGGAGCCCCAGTCCCATCTGTCGGACGGAGTGACTCCCCATAGGTCA 14499 Query 153240 TACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGT 153299 | || ||| ||| | || ||||| || || | || ||| || || | Sbjct 14500 AATTGGAACTTCCCTTGGCTTGCGGGCGATCCTTCATAAGTGGCATAGGGTCCCTCT--T 14557 Query 153300 TGG--GCCAGTTCGC-AGCTAGCCTCGAGCG-CGCCATAGTATATGGTTTCGGCGATTTG 153355 || || || || || | | | |||| | || ||||| || || || ||||| Sbjct 14558 CGGCAGCAAGCTCAATAGATTG--TGAAGCGGCTCCGTAGTAAATTGTCTCAAAGATTTC 14615 Query 153356 TTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTC 153415 ||| || || | |||||||| ||| | || || || ||||| ||| ||| Sbjct 14616 TTTGTTCAGCATTCGAGCTTCTTCAGATTCGAATGGGTAGCCCATCAGCAAGAAGCAGTC 14675 Query 153416 GGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGC---TGCG--CCTC 153470 || || || || | ||| | ||| || || ||||| | |||| |||| |||| Sbjct 14676 AGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGCATGTTGGAGTTGCGTGCCTC 14735 Query 153471 GCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACT 153530 | || | ||||||| ||| |||| || | || ||| || |||||| || || Sbjct 14736 GGGCACA-----GGATAGTAATTCAGATCAATGACTTGGTTCAGATTGCGCGTGACGACC 14790 Query 153531 TTAGTTATCGCCTTAAGTTTCTCGAAATCA---TAGGTC-----ATT-TCGTCGACGCGT 153581 | || | |||| || | ||| ||| || ||| || || || | | Sbjct 14791 CTTGTAACATCCTTCAGATGCTCATGGTCAAAATATGTCCGACCATCCTCATCTTCTTGC 14850 Query 153582 ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTG 153641 || | ||||| |||||| || ||||| ||||| || ||||| || | || || Sbjct 14851 ACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGTG 14910 Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| || || |||| || | |||| ||| || || || | |||||| |||||| Sbjct 14911 TACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGATTG 14970 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 ||||| |||||||| || ||| ||||||| ||||| ||| || || | ||| Sbjct 14971 CTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTG 15026 >seq7 Length=130303 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || || | |||||| || ||||| | | |||| ||||| || |||||||||||| Sbjct 35913 AGCCACCACGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGG 35854 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| || ||| || || || || || | | || || | || || || || | Sbjct 35853 AGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCG 35794 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||||||||| |||||| || || | | || | ||||||| | |||| Sbjct 35793 GGATGCCTTCTTTGTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCA 35734 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| || | ||||||||||| ||||| Sbjct 35733 CATCGAGGGTGATGGTTTTACCAGTGAGAGT 35703 >seq3538 Length=489 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||||| || || || | | || ||||| ||||| |||||||| Sbjct 208 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 267 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||| || || | | | || ||||| || || || ||||| Sbjct 268 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 327 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| ||||| | | | | ||||| | || ||||| Sbjct 328 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTTCCACA 387 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| || || |||||||||||||| Sbjct 388 TCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496212413969760