Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1217 127 3e-24 >seq1217 Length=25202 Score = 127 bits (140), Expect = 3e-24 Identities = 479/735 (65%), Gaps = 35/735 (5%) Strand=Plus/Plus Query 115894 CGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 115953 |||||| || |||||| | ||| | ||||||| || ||| |||||||| | ||||||| Sbjct 14320 CGTCTCGTGTATATGTTGCTGGTGAAGGGCTCAATGCTCTCGTTGTTACCGAGGATTTGG 14379 Query 115954 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTA 116013 || ||| || || ||||| ||||||| || || ||| | | || | | Sbjct 14380 GCAGTGCTAGCAGTAGGCATCGGTGCCACAAGCAGAGAGTTCCTCATGCCATTAGCTCGT 14439 Query 116014 ATGCG-TTCCTTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACAT 116069 | ||| |||| |||||| | ||||||| | || | | || | ||| || | Sbjct 14440 A-GCGATTCCCTGAGGGAGCCCCAGTCCCATCTGTCGGACGGAGTGACTCCC---CATAG 14495 Query 116070 ATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTC 116129 ||||| |||| | |||||| || |||||||| ||| | || |||| || ||||| Sbjct 14496 GTCAAATTGGAACTTCCCTTGGCTTGCGGGCGATCCTTCATAAGTGGCATAGGGTCCCTC 14555 Query 116130 AACCTCCGCCAATTCGG-AGCTCGCCTCGAG-GGCTGCGTGATACATTGTCTCAAAAATG 116187 | | || | || || | | | || |||| ||| || ||||||||||| || Sbjct 14556 TTCGGCAGCAAGCTCAATAGATTG--TGAAGCGGCTCCGTAGTAAATTGTCTCAAAGATT 14613 Query 116188 CGAGCATTCATTGCCTTGG--CCTCGTCGGAATCAAACGCG-AGACGGCACAAAATAAAT 116244 |||| || || | | || || || || || | | || | || | | | Sbjct 14614 TCTTTGTTCA--GCATTCGAGCTTCTTCAGATTCGAATGGGTAGCC--CATCAGCAAGAA 14669 Query 116245 ACA-TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 116303 || || || || ||||| ||||| | ||||||||||||||| | ||| || || || || Sbjct 14670 GCAGTCAGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGCATGTTGGAGTTGCG 14729 Query 116304 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 || ||| ||| ||||| ||||| ||| || || || ||||| ||||| Sbjct 14730 TGC---CTCGGGCACAGGATAGTAATTCAGATCAATGACTTGGTTCAGATTGCGCGTGAC 14786 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA---CTGCGA--GTC----TCTTC 116411 ||| |||| | || | || | || | |||||| | ||| || ||||| Sbjct 14787 GACCCTTGTAACATCCTTCAGATGCTCATGGTCAAAATATGTCCGACCATCCTCATCTTC 14846 Query 116412 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 | ||| || || ||||| || || ||||| || || | |||||||| | | Sbjct 14847 TTGCACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGC 14906 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 |||||||||| |||||| |||||||| || || | ||| || || || | || | ||| Sbjct 14907 GGTGTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTG 14966 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| || | || |||| |||||||||||||||||| || || || || || |||| Sbjct 14967 ATTGCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTG 15026 Query 116592 GGACTTGAGAATAGC 116606 || | || ||||| Sbjct 15027 AGAATCCAGTATAGC 15041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613445404487280