Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3664 129 1e-24 seq2100 129 1e-24 seq3538 125 2e-23 seq218 125 2e-23 seq7 114 3e-20 seq263 93.3 1e-13 >seq3664 Length=1078 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | ||||||||| || ||||| || | |||||||||| | ||| Sbjct 845 TCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGT 786 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||||| || || || ||||| ||||| || ||| |||||| Sbjct 785 TCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCC 726 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || || || || || | ||||| | | ||| |||||||| Sbjct 725 TTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAA 666 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||||||||| Sbjct 665 GGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTG 627 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | ||||||||| || ||||| || | |||||||||| | ||| Sbjct 1073 TCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGT 1014 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||||| || || || ||||| ||||| || ||| |||||| Sbjct 1013 TCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCC 954 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || || || || || | ||||| | | ||| |||||||| Sbjct 953 TTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAA 894 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||||||||| Sbjct 893 GGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTG 855 >seq2100 Length=597 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | |||||||||||| ||||| || | |||||||||| | ||| Sbjct 389 TCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGT 330 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||||| || || || ||||| ||||| || ||| |||||| Sbjct 329 TCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCC 270 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || || || || || | ||||| | | ||| ||||||| Sbjct 269 TTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAG 210 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || |||||||| || Sbjct 209 GGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTG 171 >seq3538 Length=489 Score = 125 bits (138), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | |||||||||||| ||||| || | |||||||||| | ||| Sbjct 213 TCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGT 272 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||||| || || || ||||| ||||| || ||| |||||| Sbjct 273 TCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCC 332 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG--ACGGTGTCTGTTGTTTCTACATCC 199585 ||| ||||| || || || || || |||| | ||||| | | ||| |||||| Sbjct 333 TTCCTTATCCTGGATTTTCTGTTTGAC--ATTCKCAATCGTGTCCGACGCTTCCACATCC 390 Query 199586 AACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||| || || | || || |||||||| || Sbjct 391 AGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTG 431 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||||||||| ||||| || | |||||||||| | ||| | |||||||||| || Sbjct 3 GTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTG 62 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| || || || ||||| ||||| || ||| ||||||||| ||||| || || Sbjct 63 CTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 122 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || || || | ||||| | | ||| ||||||| ||||| ||||| || || Sbjct 123 CTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGT 182 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || |||||||| || Sbjct 183 CAATGTCTTGACAAAAATCTG 203 >seq218 Length=95557 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | ||||||||| || ||||| || | |||||||||| | ||| Sbjct 87379 TCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGT 87320 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||||| || || || ||||| ||||| || ||| |||||| Sbjct 87319 TCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCC 87260 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || || || || || | ||||| | | ||| ||||||| Sbjct 87259 TTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAG 87200 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||||||||| Sbjct 87199 GGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATTTG 87161 >seq7 Length=130303 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| | || | || || ||||| |||| ||||||||| | | ||| Sbjct 35905 CGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 35846 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || ||||| ||||| | ||||| || || || ||| Sbjct 35845 CGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCT 35786 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| || || ||||||||| |||| ||||| | | ||| ||||| | Sbjct 35785 TCTTTGTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGG 35726 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| || ||||| |||||||| Sbjct 35725 GTGATGGTTTTACCAGTGAGAGT 35703 >seq263 Length=166476 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || | ||| || ||||| |||| ||||||||| | | ||| Sbjct 119181 CGGAGGCGCAGTACGAGATGTAAAGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTA 119122 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || |||||||||||||| ||||| | |||||||| || || |||||| Sbjct 119121 CGTCCATCCTCGAGCTGCTTTCCGGCAAAGATTAATCGCTGCTGATCAGGCGGGATTCCT 119062 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || ||||| || || ||||| || Sbjct 119061 TCCTTATCCTGGATTTTCTGCTTAAC 119036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178799884449886