Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2397 111 1e-19 seq2349 107 1e-18 seq80 105 5e-18 seq826 102 6e-17 seq470 102 6e-17 seq3592 93.3 3e-14 seq1543 91.5 1e-13 seq250 89.7 4e-13 seq2100 84.2 2e-11 >seq2397 Length=4497 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| || ||||||| ||| ||| || || ||||| ||||| | || | ||| || Sbjct 1990 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCA 1931 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||| || || ||||||| || ||||||||||||| || | |||||||||| Sbjct 1930 TCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTG 1871 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||||| | || | | || || | | |||||| ||||| || || Sbjct 1870 TCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATG 1811 Query 39685 GTTTTACCCGT 39695 || ||||| || Sbjct 1810 GTCTTACCAGT 1800 >seq2349 Length=20186 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| || ||||| ||||| ||| ||||| || || |||||||||| | Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || | || || || ||||||||||||| || Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| || || ||||| ||||| | || | | || || | | ||||| Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCACA 7649 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGT 39701 |||| || || || || || || ||||| Sbjct 7650 TCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq80 Length=198448 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| || ||||||| ||| ||| || || ||||| ||||| | | | ||| || Sbjct 77015 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCA 77074 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| || ||||||| || ||||||||||| | || | |||||||||| Sbjct 77075 TCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTG 77134 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||||| | || | | || || | | |||||| ||||| || || Sbjct 77135 TCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATG 77194 Query 39685 GTTTTACCCGT 39695 || ||||| || Sbjct 77195 GTCTTACCAGT 77205 >seq826 Length=494 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| || | ||| ||| || || ||||| || || | Sbjct 458 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 399 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| |||||||| |||||||| |||||| | ||| |||||||| | || Sbjct 398 AGAGTTCGACCATCTTCCAATTGCTTTCCCGC-AAAAATCAGACGTTGCTGATCAGGAGG 340 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | ||||| || || ||||| ||||| | || | | |||||| | ||||| ||| Sbjct 339 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTT-CCA 281 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || || || || || || || || || ||||||||||| Sbjct 280 CATCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAGATCTGCAT 232 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| || | ||| ||| || || ||||| || || | Sbjct 230 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 171 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| |||||||| |||||||| |||||| | ||| |||||||| | || Sbjct 170 AGAGTTCGACCATCTTCCAATTGCTTTCCCGC-AAAAATCAGACGTTGCTGATCAGGAGG 112 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | ||||| || || ||||| ||||| | || | | ||||| | ||||| ||| Sbjct 111 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTT-CCA 53 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| || || || || || || || || || || ||||||||||| Sbjct 52 CATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 4 >seq470 Length=818 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| || | ||| ||| || || ||||| || || | Sbjct 331 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 390 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| |||||||| |||||||| |||||| | ||| |||||||| | || Sbjct 391 AGAGTTCGACCATCTTCCAATTGCTTTCCCGC-AAAAATCAGACGTTGCTGATCAGGAGG 449 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | ||||| || || ||||| ||||| | || | | |||||| | ||||| ||| Sbjct 450 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTT-CCA 508 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| || || || || || || ||||| || || ||||||||||| Sbjct 509 CATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| || | ||| ||| || || ||||| || || | Sbjct 559 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 618 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||||||| ||||| ||||||| | ||| |||||||| | || Sbjct 619 AGAGTTCGACCATCTTCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 678 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| || || ||||| ||||| | || | | |||||| | ||||| |||| Sbjct 679 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTT-CCAC 737 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || || || || || ||||| || || ||||||||||| Sbjct 738 ATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 785 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| || | ||| ||| || | ||||| || || | Sbjct 103 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAA 162 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| |||||||| |||||||| |||||| | ||| |||||||| | || Sbjct 163 AGAGTTCGACCATCTTCCAATTGCTTTCCCGC-AAAAATCAGACGTTGCTGATCAGGAGG 221 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | ||||| || || ||||| ||||| | || | | ||||| | ||||| ||| Sbjct 222 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTT-CCA 280 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| || || || || || || ||||| || || ||||||||||| Sbjct 281 CATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 >seq3592 Length=385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 39563 CATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCT 39621 |||| |||||||| |||||||| |||||| | ||| |||||||| | || | ||||| Sbjct 336 CATCTTCCAATTGCTTTCCCGC-AAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 278 Query 39622 TTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGT 39680 || || ||||| ||||| | || | | ||||| | ||||| |||||||||| || Sbjct 277 TTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTT-CCACGTCCAAGGT 219 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || || ||||||||||| Sbjct 218 GATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 180 >seq1543 Length=600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| || | ||| ||| || || ||||| || || | Sbjct 186 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 245 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||||||| || || ||||||| | ||| |||||||| | || Sbjct 246 AGAGTTCGACCATCTTCCAATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 305 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| || || ||||| ||||| | || | | ||||| | ||||| |||| Sbjct 306 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTT-CCAC 364 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || || || || || || || || || ||||||||||| Sbjct 365 ATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 412 >seq250 Length=105897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||||||||| | |||| ||| || || ||||| || |||| Sbjct 9424 CCACCACGGAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAA 9483 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| ||||| || || || | ||||| || ||||||||||||| || Sbjct 9484 AGAGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGA 9543 Query 39613 ACGCCTTCTTTGTC 39626 | |||||| ||||| Sbjct 9544 ATGCCTTCCTTGTC 9557 >seq2100 Length=597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 39563 CATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCT 39621 |||| |||||||| |||||||| |||||| | ||| |||||||| | || | ||||| Sbjct 552 CATCTTCCAATTGCTTTCCCGC-AAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 494 Query 39622 TTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGT 39680 || || ||||| ||||| | || | | |||||| | ||||| |||| |||| || Sbjct 493 TTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTT-CCACATCCAGGGT 435 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || || || || ||||||||||| Sbjct 434 GATGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347335485917114