Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 140 3e-28 seq5 116 4e-21 >seq7 Length=130303 Score = 140 bits (154), Expect = 3e-28 Identities = 154/200 (77%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 || ||||| || |||||||||||| |||| || || ||| |||||| | | |||| | Sbjct 35703 ACTCTCACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACG-T 35761 Query 38321 TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACG 38379 || | ||||||| |||||||| || || |||||| || || || ||||||||| || Sbjct 35762 GAAGCAGAAAATCCAGGACAAAGAAGGCAT-CCCGCCTGATCAGCAAAGGCTCATTTTCG 35820 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | || || |||||||| |||| ||||| ||| ||||||||||||||| |||||| | | Sbjct 35821 CAGGGAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAA 35880 Query 38440 CGCTGCATTTGGTGCTGCGT 38459 | |||||||||| ||||| Sbjct 35881 CCTTGCATTTGGTCTTGCGT 35900 >seq5 Length=391144 Score = 116 bits (128), Expect = 4e-21 Identities = 292/442 (66%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 |||||| || || || ||||| | || |||||||||||||| | ||| || ||| Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | || ||||| || || | ||||| | |||||| || | | ||| ||||| || Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGAGCAGAATGAACCCGAGAA 174627 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 |||| || || || || || || || | | || || || | ||| | || Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAA--GCC 174685 Query 133071 GG--CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 || | |||| |||||||||| || ||||| ||| || || || || |||| ||| Sbjct 174686 GGATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATT 174745 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA 133188 ||||| || | || |||||||| | | ||| |||||||||||| ||| Sbjct 174746 GCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAA 174805 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 || | ||| || || | ||| |||| |||||||| || ||||| || || || || || Sbjct 174806 TAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCA 174865 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 ||| || ||||| || || || | ||||| ||||| || || || ||||| Sbjct 174866 GGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTT 174925 Query 133309 GCGGCGAAAAAGGCCAGCACGT 133330 || || || || || || |||| Sbjct 174926 GCAGCAAAGAAAGCAAGGACGT 174947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500122420094720