Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1110 242 3e-58 seq7994 116 3e-20 seq196 86.0 5e-11 >seq1110 Length=22515 Score = 242 bits (268), Expect = 3e-58 Identities = 912/1403 (65%), Gaps = 57/1403 (4%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | || |||||||||||||| ||||| | |||| | || || ||||| || || | Sbjct 8460 GCACTGACGTTAAGAATACCATTCGCATCGATATCATAGGTAACCTCAATCTGGGGAATA 8519 Query 517319 CCTCTCTGAGCA--GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | ||| | || || || || || || | || || | || ||| || || || | Sbjct 8520 C--CTCGGGCCATGGGGGGAATACCGTCTAGATGGAACTTCCCTAGAAGGTTGTTGTCCT 8577 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAA 517435 | || | ||||| |||||||||| ||| || ||| || ||| ||| || || || Sbjct 8578 TGGTCATAGAGCGTTCTCCCTCGAAAACTTGAATCAGT-ACACCAGGTTGGTTGTCAGAG 8636 Query 517436 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 517494 || || | ||| |||| | || || || ||||| || ||||||| ||| | | Sbjct 8637 TATGTGGAGAAT-GTCTGTGTCTTCTTGCAGGGAATGGTCGTGTTTCGGGGAATGAGTGT 8695 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 ||||| | |||||| |||||||| | ||| | || | ||||| ||||| | ||| | Sbjct 8696 TGTCATCACACCACCAGCTGTTTCGAGACCCATGGACAAAGGAGCTACATCCAATAGCAA 8755 Query 517555 AATATTTTGAAGTTT------TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 517608 | || | | ||| | |||||| ||| |||| ||||||||||| | | Sbjct 8756 CAAATCATCCAATTTCCCTCCCTTGTCAGTT---CCAGCAAGGATAGCTGCTTGTACTGT 8812 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAG-TTTTTTACCATT 517665 ||| || || || || ||||||||||| || | | || || || || || ||||| Sbjct 8813 AGCTCCGTAGGCTACGGCTTCATCAGGGTTGATGCTCTTACA---AGCTTCCTTTCCATT 8869 Query 517666 GAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATA 517724 |||| | | ||||| | | ||| | ||| || ||||| | || |||||||| | | Sbjct 8870 GAAATACTCAGAAAGCA-TATTCTGGATCTTGGGGATACGGGTAGAACCTCCAACAAGAA 8928 Query 517725 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 517784 | |||||||| || | | ||| ||| || | ||| | |||||| || || || | Sbjct 8929 CGATTTCATGTACGTCTCCTTTGCCCATCTTGGCATCGCGAAGAACTTTATCCACAGGCT 8988 Query 517785 CAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 517844 || | | || |||| || | ||||||||| ||| | |||||| || Sbjct 8989 GAACTGTCTTCTTGAAATAGTCCATGCACATTTCTTCGAAACGAGCACGAGTAAGTGTTG 9048 Query 517845 CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 | | ||||| | |||||| || | || || | ||| || || ||||| || | Sbjct 9049 TACTGTAATCTACTCCTTCAAAGAGTGAGTCGATTTCGATGAAAGCCTGAGTACTTGAGG 9108 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 517964 | || | ||||| || || || ||||| || || | | || | || || | | Sbjct 9109 AAAGCGTGCGTTTTGCCCGCTCGCATGCGGTTCTCAAACGACGAATGG----AGC-GTTG 9163 Query 517965 GATTCAAATCTGTT--TT---ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 518019 | ||| | | | | || | || ||||||| || ||| || | ||| | Sbjct 9164 GTTTCCACTTGGGTCCTTGCGGTGCTTCTTCTTGAAGTCAGCAATGCAATACTCTACCAA 9223 Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| || || |||||||| |||||||| | |||| || | |||||| | |||| || Sbjct 9224 ACGGTTGTCGAAATCTTCTCCTCCCAAGTGGGTATCACCAGCAGTAGCTTTCACTTCAAA 9283 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 || ||||||||||| || | | || ||||| ||||| ||||| | ||| ||||| Sbjct 9284 AATTCCATCTTCAATAGTGAGCAAAGAAACATCGAAAGTTCCTCCACCAAGATCGAAAAT 9343 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAG 518198 | ||| | ||||| | || ||| || || | ||| || || | || || || | Sbjct 9344 CA--ACA--CGTTTCTCTCTCCACCTTTCTTGTCCAAACCGTAGGCGATGGCGGCTGCTG 9399 Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258 | |||||||| ||||| | || ||||| | ||| || || |||||||| |||| Sbjct 9400 TGGGTTCATTGATAATGCGCAGTACATTCAAGTTAGCGATAGACCCGGCATCTTTGGTGG 9459 Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTT 518318 |||| | |||||| ||||| || || ||||| ||||| | ||| || | |||||| Sbjct 9460 CTTGACGTTGTGAGTCGTTGAAGTACGCAGGGACAGTCACAACCGCGTTTCGGACTTCTC 9519 Query 518319 TACCAATATAAGCGCTT---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 518375 |||| || ||| || | | |||||| || | || | ||| ||||| | || Sbjct 9520 CTCCAAGGAAA---CTTTCGGCAATCTCTTTCATCTTGGTCAAGACCATGGATGAGACTT 9576 Query 518376 GTTCTGGGGAATATTGCTTGGATTCATT---TTGATATGATA-CTTCAAAATATGGTTT- 518430 || | | | | | || | || | ||| || | | || ||| || ||| || Sbjct 9577 CCTCCGCAGCAAACT--TTACAGTCTCTCCCTTG-TAAGTCACCTGCAACAT-TGGCTTG 9632 Query 518431 --ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG 518488 || | || || || | |||||||||| |||||||||| ||| ||| || Sbjct 9633 TCGTTGTCTCCACGAACTACGGTGAATGGCCAGTGCTTCATATCTGCTTGTACAACAGGG 9692 Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548 ||| ||| | | ||||| | || || |||||||| | ||| |||| || || || Sbjct 9693 TCAGAAAACTTGCGGCCAATGAGACGCTTGGCATCAAAGACAGTGTTGGAGGGGTTCATC 9752 Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 518608 || | || | ||||| ||||||||||||||| | || ||||| || || | ||||| Sbjct 9753 GCCGTCTGGTTCTTGGCGGCATCTCCAATCAGACGCTCGGTCTCAGTGAACGCCACATAA 9812 Query 518609 GATGGAGTTGTGCGATTACCTTG 518631 || ||||| || |||||||| || Sbjct 9813 GAAGGAGTGGTACGATTACCCTG 9835 >seq7994 Length=787 Score = 116 bits (128), Expect = 3e-20 Identities = 321/487 (66%), Gaps = 9/487 (2%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| |||| | || |||||||| || || | ||||| ||||| || ||||| || Sbjct 676 GCACTCACGTGCAGGATACCATTAGCGTCGACGTCAAAAGTGACCTCGATTTGGGGAGTA 617 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| | ||||||||| || ||||| | || | |||| || || || || Sbjct 616 CCTCTTGGCATAGGTGGGATTCCATCCAAGTGGAACTTACCCAACAAGTTGTTGTCCTTG 557 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || |||||||| || | || || || | | |||||||| | ||| Sbjct 556 GTCATAGAGCGCTCACCCTCAAATACCTGAATCAACACACCGGGCTGATTATCAGCATAC 497 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || | ||| | || || || || || |||||||| | || |||| | || Sbjct 496 GTCGAGAAGGTT-TGGTTCTTCTTGCATGGGATGGTTGTGTTACGTTCGATAAGCGTAGT 438 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | |||||| || ||||| ||||| || || ||||| | || || | || | | Sbjct 437 CATCACACCACCGGCAGTTTCCAAACCGAGGGATAGAGGGGCAACGTCCAGCAGAAGCAA 378 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACC 517614 | | || || | |||| | ||| || | |||||| ||||| |||| ||| || Sbjct 377 GTCATCCAGCTTCCCTCCAGTGTCACCGCCACTCAAAATAGCCGCTTGGATAGTAGCTCC 318 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 || |||||||| ||||||||||||| ||| | || || |||||||| | | Sbjct 317 GTAAGCAACAGCCTCATCAGGATTAATGTTTTTGCATGCTTCCTTGCCATTGAAGTATTC 258 Query 517675 TGAAAGAAGTTGTCTT--ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 ||| | ||| || | ||| || ||||||| |||||||| ||||| || || ||| Sbjct 257 CTCAAGCA--TGTTTTGGATCTTCGGGATACGAGTAGATCCTCCTACTAAGACGATCTCA 200 Query 517733 TGCACCT 517739 | |||| Sbjct 199 TCTACCT 193 >seq196 Length=210786 Score = 86.0 bits (94), Expect = 5e-11 Identities = 256/386 (66%), Gaps = 8/386 (2%) Strand=Plus/Minus Query 517257 CGGCAGTCACAT-TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 |||| | |||| ||||| |||| || || || | |||||||||||||| || || || Sbjct 41154 CGGCGGAAACATGTAAGA-TACCGTTAGCGTCAATTTCAAATGTGACTTCGATCTGGGGT 41096 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 ||||| |||| ||||| || || | | |||| |||| ||| | || || Sbjct 41095 GTGCCTCTGGGAGCCGGTGGAATACCGCTGAGTTCAAATTTTCCTAGAAGCTGGTTGTCC 41036 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 || || | || |||||||| ||||| ||||| | || | | |||||||| | Sbjct 41035 TTGGTCATGGATCTTTCACCCTGGAAAACCTGGATCATGACGGCTGGCTGATTATCCTGA 40976 Query 517436 TAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 517494 ||||| | || | ||||| | || || ||||| ||||| | | || | || Sbjct 40975 TAAGTGCTGAA-AGTCTGGCTCTTCTTGGTTGGAATGACAGTGTTACGGTTGATTAACTT 40917 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAG-GA 517553 |||||| | |||||| | ||||| | ||| | ||||| || || ||||| | || | Sbjct 40916 GGTCATTACACCACCGACGGTTTCAATACCCAATGAAAGGGGTGTCACATCGAGCAGCAA 40857 Query 517554 CAATATTTTGAAGTTT-TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCA 517612 ||| |||| |||| ||| | | || ||| || || || |||| | ||| ||| Sbjct 40856 CAAGTCTTTG--GTTTCTTCTTTCGCTTCACCGGAGAGGATTCCTCCTTGCACAGCGGCA 40799 Query 517613 CCATATGCAACAGCTTCATCAGGATT 517638 || || || || |||||||| || || Sbjct 40798 CCGTAAGCGACGGCTTCATCTGGGTT 40773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780422535496948