Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 109 7e-19 seq146 96.9 4e-15 >seq5 Length=391144 Score = 109 bits (120), Expect = 7e-19 Identities = 295/445 (66%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 101878 ATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTT 101937 |||||| | | ||| | | ||| |||| || |||||||||| |||||| ||||| Sbjct 174968 ATGAAAGGCACTTCTTGAGCTACGTCCTTGCTTTCTTTGCTGCAAGCGATGGTATTGTGA 174909 Query 101938 TTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCT 101997 |||||| || | | |||||||| || || ||| ||||||| | | ||||| Sbjct 174908 ACGAGAATCTCGCTGAAAACTTTGCCAGCGAAGTACAAGTGCCTGAAGCTCGCTGTTTCT 174849 Query 101998 ATGCGTATCAATGTCATAATG-AAATGGTGCATGGGGA-GAC-ATACAGTAAACTCATAG 102054 | | || || | || || ||| | ||| || | | || || | ||||| | Sbjct 174848 ACG-GTTTCCAAATCGCTGTGGAAAACATCCATTCTGAAGTCTATTCACTC--CTCATCG 174792 Query 102055 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 102114 ||| || ||||| ||| ||||| | || || || | || |||||||| | | Sbjct 174791 ACACTTACATTAAAGATAAGAAAGAGAAAGACCACCTTTTCAACGCAATCCAAACCATCC 174732 Query 102115 CATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCT 102174 | ||| | || ||| || || ||||| || | ||| ||| | | |||| Sbjct 174731 CCTGTGTGAAACGGAAGGCAGACTGGGCGCTGCAATGGACAGATCCGGCTTATGCCTCCT 174672 Query 102175 TTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCT 102234 || |||| ||| | | |||||||| |||||| || ||||| ||||| ||||| |||| Sbjct 174671 TTCCTGAACGAGTTATTGCATTTGCTGCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCT 174612 Query 102235 GCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGC 102294 || | || | |||| | || ||| | || || ||||| |||||||||||||| || || Sbjct 174611 GCTCAATCTTTTGGATAAAAAAGAGGGGACTTATGCCTGGTCTCTGCTTCTCTAATGAAT 174552 Query 102295 TTATCTCTCGTGACGAGGGACTCCA 102319 | || || | ||||| ||||| || Sbjct 174551 TGATTTCCAGGGACGAAGGACTACA 174527 >seq146 Length=179389 Score = 96.9 bits (106), Expect = 4e-15 Identities = 318/489 (65%), Gaps = 18/489 (4%) Strand=Plus/Minus Query 175781 GCTTTTT--GAATGTTATCCTTGATATCCTTTGGATTGAA---TGGAGGCACATAACAAC 175835 ||||||| ||||||| | | |||||||| || |||| |||| | | || | | Sbjct 61760 GCTTTTTCCGAATGTTTTTGATAATATCCTTCGGGCTGAAGTTTGGAATCGAAGAAGACC 61701 Query 175836 TGAAACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGT 175895 | || |||||||| || || | ||||| || || ||||||| | | || | | Sbjct 61700 ---ATCCAGTACCGATTCCATCGCTGCCGTTGACTAGTGCCATGGGAATTACGGGAAGAT 61644 Query 175896 AGAAGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTC 175955 | | || ||||||||| || ||||| || || |||| || | || || || Sbjct 61643 ACCACTCAGGCTCAATGCTACGTCCATCTTCTTCGTAATACGAAAGTAACGGGTCGTCAT 61584 Query 175956 TCGGATCAAAGATCTTTCGGGCATCTTTTGTGAG----CTTTGTAAAGATATACCTCGTT 176011 |||| ||| || |||| | | || ||| ||| |||||||||||||||| Sbjct 61583 CGGGATGAAAAATAGTTCGCGTAA----TGGGAGACAACTTCGTAAAGATATACCTCGAA 61528 Query 176012 TGAGACG-CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAG 176070 ||| || |||| ||||||||||| || || |||||||||||||| | || | || || Sbjct 61527 -GAGGCGGCATCTTTACCACCCATCAGGCGTGTACCAAACTGACCGGATGGTACCAGCAG 61469 Query 176071 ATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGA 176130 || | ||||| || || | | | | ||||| | || || || | || || || Sbjct 61468 GTTCAGGTTGTTGGATCCTACAAAATTCTGCGCCATCCCAACGATAGTTGCAGCAAGTGA 61409 Query 176131 GACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTT 176190 | ||| || |||||||| ||| | ||| | ||| | | || | ||| || || || Sbjct 61408 CATTTCGCCATGGTGGTAGGCAGCATGCTCCGAAACATAACCAGCAAGCTGAGCAACCTT 61349 Query 176191 CATCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTT 176250 || || | ||| | ||| | ||| || | | | ||| || || || | |||||| Sbjct 61348 GATTTCTTTCTTTAAGTTCCGTTTGAAGCAACTGAAGAGAACTTTCCGCTGTGCAGGCTT 61289 Query 176251 GAGACCATC 176259 || ||||| Sbjct 61288 CAGTCCATC 61280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620679875721760