Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq146 116 4e-21 seq7408 95.1 1e-14 seq1217 87.8 2e-12 seq279 87.8 2e-12 >seq146 Length=179389 Score = 116 bits (128), Expect = 4e-21 Identities = 195/275 (71%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 167508 CTTCGTAAAGATGTACCTCGTCTGAGACG-CATCCTTGCCACCCATGAGGCGTGTACCAA 167566 |||||||||||| ||||||| ||| || |||| || |||||||| ||||||||||||| Sbjct 61549 CTTCGTAAAGATATACCTCGAA-GAGGCGGCATCTTTACCACCCATCAGGCGTGTACCAA 61491 Query 167567 ATTGACCACATGGCTCGAGAAGATTGATGTTATTCGACCCCGTATAATCGTTGGCCAACT 167626 | ||||| |||| | || || || | ||| || || || | ||| | |||| | Sbjct 61490 ACTGACCGGATGGTACCAGCAGGTTCAGGTTGTTGGATCCTACAAAATTCTGCGCCATCC 61431 Query 167627 TGACGATCGTTTCAGCGAGGGAAACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACAT 167686 ||||| ||| |||| || || | |||||| |||||||| ||| | || | |||| Sbjct 61430 CAACGATAGTTGCAGCAAGTGACATTTCGCCATGGTGGTAGGCAGCATGCTCCGAAACAT 61371 Query 167687 ATGCTGCCAACTGTGCAACCTTCATCTC-ATCTTTGAGATTCTTTTG--GAAACATGAAT 167743 | | || | ||| |||||||| || || ||||| || | | |||| | ||| ||| Sbjct 61370 AACCAGCAAGCTGAGCAACCTTGATTTCTTTCTTTAAGTTCCGTTTGAAGCAAC-TGA-- 61314 Query 167744 ACATAACCTTGCGTTGAGAAGGTTTGAGACCATCT 167778 | | ||| || || || | ||| || || |||||| Sbjct 61313 AGAGAACTTTCCGCTGTGCAGGCTTCAGTCCATCT 61279 >seq7408 Length=549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 167508 CTTCGTAAAGATGTACCTCGTCTGAGACG-CATCCTTGCCACCCATGAGGCGTGTACCAA 167566 |||||||||||| ||||||| ||| || |||| || |||||||| | ||||||||||| Sbjct 190 CTTCGTAAAGATATACCTCGAA-GAGGCGGCATCTTTACCACCCATCAAGCGTGTACCAA 132 Query 167567 ATTGACCACATGGCTCGAGAAGATTGATGTTATTCGACCCCGTATAATCGTTGGCCAACT 167626 | ||||| |||| | || || || | ||| || || || | ||| | |||| | Sbjct 131 ACTGACCGGATGGTACCAGCAGGTTCAGGTTGTTGGATCCTACAAAATTCTGCGCCATCC 72 Query 167627 TGACGATCGTTTCAGCGAGGGAAACTTCGCCGTGGTGGTAAGCA 167670 ||||| ||| |||| || || | |||||| |||||||| ||| Sbjct 71 CAACGATAGTTGCAGCAAGTGACATTTCGCCATGGTGGTAGGCA 28 >seq1217 Length=25202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 110296 GCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAG 110355 ||||||||||| || | ||||| ||| ||||||| || | |||||| ||||||||| Sbjct 14875 GCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGTGTACTCTACAATTTCGGTACACAAG 14934 Query 110356 TTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415 ||||| | ||| || ||| | || | ||||| ||| | ||||| | |||||| Sbjct 14935 TTGGAGCACTTGATTGTACCAAGATTTTGTTGATTGCTTTTCGCATTGCACGAATCCTTG 14994 Query 110416 TAGAGCATGTATGGGGTACCAGTTTC 110441 |||||||| || || || || ||||| Sbjct 14995 TAGAGCATATACGGAGTGCCTGTTTC 15020 >seq279 Length=105767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||||| | Sbjct 41116 TAGCTCAGTTGGTTAGAGCGTAGTGCTAATAACGCTAAGGTCCTGGGTTCGAGCCCCAGT 41175 Query 136777 GGGAACAGCTTTT 136789 |||| || |||| Sbjct 41176 GGGAGCATTTTTT 41188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588916675392400