Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1217 122 1e-22 seq146 104 3e-17 >seq1217 Length=25202 Score = 122 bits (134), Expect = 1e-22 Identities = 241/351 (69%), Gaps = 17/351 (5%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || || ||||| ||||| | ||||| || | || ||||| || || || || || Sbjct 14674 TCAGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGCATGTTGGAGTTGCGTGC- 14732 Query 106340 GTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| || ||||| |||| ||||||||| |||| ||||| || || | | Sbjct 14733 --CTCGGGCACAGGATAGTAATTCAGATCAATGACTTGGTTCAGATTGCGCGTGACGACC 14790 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAA---GTGCGAGTCTCTTCAT-----TG- 106447 |||| | || | || | |||| |||||| || ||| || |||| || Sbjct 14791 CTTGTAACATCCTTCAGATGCTCATGGTCAAAATATGTCCGACCATCCTCATCTTCTTGC 14850 Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAA-ATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 ||| || | ||||| || | || ||| |||||| || || |||||||| | | || Sbjct 14851 ACAAACATATTCAGGGCAAT-GCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGT 14909 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||||| |||||| |||||||||||||| | ||| || || || | ||| | ||| || Sbjct 14910 GTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGATT 14969 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 || || ||||||| ||||||||||||||| || || || || || || Sbjct 14970 GCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTC 15020 >seq146 Length=179389 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 168468 GCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATG 168527 ||||| ||||||||||| || || |||||||| ||||| | ||| | || ||||| | | Sbjct 61521 GCATCTTTACCACCCATCAGGCGTGTACCAAACTGACCGGATGGTACCAGCAGGTTCAGG 61462 Query 168528 TTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCA 168587 ||||| || || | | | |||| | ||| || || | || | || | ||| Sbjct 61461 TTGTTGGATCCTACAAAATTCTGCGCCATCCCAACGATAGTTGCAGCAAGTGACATTTCG 61402 Query 168588 CCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCA 168647 ||||||||||| |||| | |||| ||||| | || || || || ||||| ||||| Sbjct 61401 CCATGGTGGTAGGCAGCATGCTCCGAAACATAACCAGCAAGCTGAGCAACCTTGATTTCT 61342 Query 168648 TCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCA 168707 | ||| | ||| | ||||||| | | ||||||| ||||| |||||| || ||| Sbjct 61341 TTCTTTAAGTTCCGTTTGAAGCAACTGAAGAGAACTTTCCGCTGTGCAGGCTTCAGTCCA 61282 Query 168708 TC 168709 || Sbjct 61281 TC 61280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589921374183920