Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 154 2e-32 >seq5 Length=391144 Score = 154 bits (170), Expect = 2e-32 Identities = 299/435 (69%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 ||| ||||| ||||||||||||||||| ||||| || |||||||||||||| || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAA 19075 | ||||||||| ||||| || ||||||| ||| || || | |||| ||||| || || | Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTG-AGCAGAATGAACCCGAGA 174626 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 | || || ||||| || || ||||| |||| | || ||| | | |||| | Sbjct 174627 AAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 || |||||| ||| ||||| || |||||| ||| ||||| || || || | || | Sbjct 174687 GATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTG 174746 Query 19196 AATTAAATAGAT--ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 || || || | | | | || ||| ||||||||| || | || || | | Sbjct 174747 CGTTGAAAAGGTGGTCTTTCTCT-TTCT-TATCTTTAATGTAAGTGTCGATGAGGAGTGA 174804 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 || | ||| ||||| || ||||| | ||| || || || ||||| ||||| | ||||| Sbjct 174805 ATAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTC 174864 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | | |||||||| || ||| |||| | | ||| || || || || ||||| || Sbjct 174865 AGGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCT 174924 Query 19374 AGCTGCAAAAAATGC 19388 || ||||| || || Sbjct 174925 TGCAGCAAAGAAAGC 174939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562052181591120