Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5 179 4e-40 >seq5 Length=391144 Score = 179 bits (198), Expect = 4e-40 Identities = 322/465 (69%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || ||||| ||||||||||||| ||||| || || |||||||||||||| ||| Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA-GATCCAGAAAA 37291 | || ||||| | || || ||||| |||||||| |||| ||| || || || || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGAA 174627 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 || || |||||||| || |||||||| | || ||| | ||||| || |||| | Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAG-GAAAG--GAGGCATAAGC 174684 Query 37352 AGAAA---TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | | |||||| | ||| |||||||| ||| ||||| || |||| || Sbjct 174685 CGGATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGAT 174744 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || || || || ||| |||| ||||| | || ||||| || || || | Sbjct 174745 TGCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGA 174804 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||| | |||||| || || ||||| | ||| || || ||||| || ||||| | |||||| Sbjct 174805 ATAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTC 174864 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 || | ||| || ||| | ||| | | ||| | || || || || || ||||| || Sbjct 174865 AGGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCT 174924 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 || |||||||||||||| || || | | || || |||||||| Sbjct 174925 TGCAGCAAAGAAAGCAAGGACGTAGCTCAAGAAGTGCCTTTCATC 174969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592257138890320