Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1217 87.8 3e-12 >seq1217 Length=25202 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 221102 TTGACCATGTGCTTGTTCACCACTTGGAAAT-CTCCCGAGAGCACCCTCCTCTGGTACAG 221160 |||| |||||| ||||| || | | |||| |||| | || |||| ||| ||| | Sbjct 14275 TTGAGCATGTGTTTGTTTACG-CAGGCAAATTCTCCAGCAAGAACCCGTCTCGTGTATAT 14333 Query 221161 GTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGT 221220 ||| ||||| || || |||||||||||||| || ||||| || || ||||| || || Sbjct 14334 GTTGCTGGTGAAGGGCTCAATGCTCTCGTTGTTACCGAGGATTTGGGCAGTGCTAGCAGT 14393 Query 221221 GGGCATGGGTGCCACCAGCAGA 221242 ||||| |||||||| |||||| Sbjct 14394 AGGCATCGGTGCCACAAGCAGA 14415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928751242107520