Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3664 104 2e-17 seq218 100 2e-16 seq3538 96.9 3e-15 seq1543 95.1 1e-14 seq826 95.1 1e-14 seq2100 91.5 1e-13 seq470 87.8 2e-12 seq3592 84.2 2e-11 >seq3664 Length=1078 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 28542 GATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAA 28601 |||| || || ||||||||| ||||| || ||||| || || || ||||| ||| || Sbjct 613 GATTCTG-AACAATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGAT 671 Query 28602 ACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTG 28661 |||| | || || ||| | | || |||| || |||||| || || || ||| | Sbjct 672 GTGGAAGCGTCGGACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATT 731 Query 28662 CCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATG 28721 || ||||| || | || || |||||||| || |||||||||||| | |||| | Sbjct 732 CCTCCTGATCAGCAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTT 791 Query 28722 GCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGG 28781 | || || || ||||| || ||||| ||||| ||| |||| || | | ||||| || Sbjct 792 TCTGACTACAATATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGT 851 Query 28782 AT 28783 || Sbjct 852 AT 853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 852 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 911 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || |||||| || || || ||| | || ||||| Sbjct 912 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 971 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 972 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 1031 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| || ||||| ||||| ||| |||| || Sbjct 1032 ATTCAGAAGGAATCAACTCTCCACTTGGTCTT 1063 >seq218 Length=95557 Score = 100 bits (110), Expect = 2e-16 Identities = 168/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 28542 GATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAA 28601 |||| || || ||||||||| ||||| || ||||| || || || ||||| ||| || Sbjct 87147 GATTCTG-AACAATGCAAATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGAT 87205 Query 28602 ACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTG 28661 |||| | || || || | | || |||| || |||||| || || || ||| | Sbjct 87206 GTGGAAGCGTCGGACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATT 87265 Query 28662 CCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATG 28721 || ||||| || | || || |||||||| || |||||||||||| | |||| | Sbjct 87266 CCTCCTGATCAGCAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTT 87325 Query 28722 GCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGG 28781 | || || || ||||| || ||||| ||||| ||| |||| || | | ||||| || Sbjct 87326 TCTGACTACAATATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGT 87385 Query 28782 AT 28783 || Sbjct 87386 AT 87387 >seq3538 Length=489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 434 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 375 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 374 GACACGATTGMGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 315 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 314 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 255 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 254 ATTCAGAAGGAATCGACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 206 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 147 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 146 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 86 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 27 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || ||||| ||||| ||| Sbjct 26 ATTCAGAAGGAATCGACTCTCCAC 3 >seq1543 Length=600 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 412 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 353 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 352 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 293 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 292 CAACGTCTGATTTTTGCGGGRAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 233 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 232 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 183 >seq826 Length=494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 4 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 63 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 64 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 123 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 124 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 183 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 184 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 232 ATGCAGATCTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 291 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || |||||| || || || ||| | || ||||| Sbjct 292 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 351 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 352 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 411 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| || ||||| ||||| ||| |||| || Sbjct 412 ATTCAGAAGGAATCAACTCTCCACTTGGTCTT 443 >seq2100 Length=597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| ||| || |||| | || Sbjct 168 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 227 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 228 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 287 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 288 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 347 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 348 ATTCAGAAGGAATCGACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| || |||| | || Sbjct 396 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 455 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || |||||| || || || ||| | || ||||| Sbjct 456 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 515 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 516 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 575 Query 28734 ATTCAAAAAGAATCTACTCT 28753 ||||| || ||||| ||||| Sbjct 576 ATTCAGAAGGAATCGACTCT 595 >seq470 Length=818 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| ||| || |||| | || Sbjct 329 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 270 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 269 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 210 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 209 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 150 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| | || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 149 ATTYAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 100 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| ||| || |||| | || Sbjct 557 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 498 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || |||||| || || || ||| | || ||||| Sbjct 497 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 438 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 437 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 378 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 377 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 328 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| ||| || |||| | || Sbjct 785 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 726 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || |||||| || || || ||| | || ||||| Sbjct 725 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 666 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 665 CAACGTCTGATTTTTGCGGGGAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 606 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| ||||| ||| |||| || | | ||||| || || Sbjct 605 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGTAT 556 >seq3592 Length=385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| ||| || |||| | || Sbjct 180 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCTTGGACGTGGAAGCGTCG 239 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || |||||| || || || ||| | || ||||| Sbjct 240 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 299 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || |||||||| || |||||||||||| | |||| | | || || || Sbjct 300 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 359 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || ||||| ||||| ||| Sbjct 360 ATTCAGAAGGAATCAACTCTCCAC 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425363022323982