Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq295 181 1e-40 >seq295 Length=301924 Score = 181 bits (200), Expect = 1e-40 Identities = 348/507 (69%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 ||| ||||| | ||| | || || |||| ||||| || ||||||||||||||| |||| Sbjct 78326 TCCGGTGGCCAAGACATAGTCCTCTGGTTGATCTTGCTGCAGCATTAACCACATACCCTC 78267 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 | || || | || || |||||||| || || | || ||||| ||||| | | Sbjct 78266 TATGTAGTCCTTTGCGTGACCCCAGTCTCGTTTCGCGTTCAGGTTTCCGAGATACA--CT 78209 Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAA 47962 || ||||| | | | ||| | || | || | ||||| || | ||| |||| Sbjct 78208 GT-TTGCTG-CTTGCCGAGGTGAATTCGCGCCACGGCACGAGTAATTTTCCTAGTCACAA 78151 Query 47963 AAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTC 48022 | || ||| | ||| || ||||| ||||| || ||||||||| |||| ||| |||| Sbjct 78150 ACGTCGGACCCCTTCTAGGGGATTCGTGATTGAACAGAATACCATTACATGCAAACATGT 78091 Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 ||||| ||| | ||||| ||| ||||| | || | |||| || || | |||| Sbjct 78090 TGTATGCTTCTCTGTAGTTGATTATGTTCCAGAAGCCGAACTGTTTGGCTACGGCGTAAG 78031 Query 48083 GAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAA 48142 |||| || |||||||| ||||| | || || || ||| ||||||| || || ||||| | Sbjct 78030 GAGAGCGCGGATAGAACGGTGTCTTTTCGGTTTGAGGAATCTCTTGGACTTTGCCATACA 77971 Query 48143 GTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTC--CATCTCAAGCAAACGGAC 48200 ||||||| || ||||||||||| | ||| | ||||| | | | || || ||| | Sbjct 77970 GTTCACTCGTAGATGCTTGATAAAATCGACACTTATCTCCGAGACCGCAGGCTAAC--AG 77913 Query 48201 TGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTC 48260 ||| | ||| | ||| || || || | ||||| | | || |||||| ||| || Sbjct 77912 TGCATTAAGAAGTCTAAGAGTCCCAAGAGCATCAACGTTGGCTGTGTACTCGCTCATTTC 77853 Query 48261 AAACGAAACCTTTACATGACTCTGTGC 48287 ||||| ||| | |||||||| || || Sbjct 77852 GAACGAGACCATCACATGACTTTGGGC 77826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665427368076560