Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq295 114 2e-20 seq146 104 3e-17 seq4924 82.4 9e-11 >seq295 Length=301924 Score = 114 bits (126), Expect = 2e-20 Identities = 289/434 (67%), Gaps = 4/434 (1%) Strand=Plus/Minus Query 177546 TTTGAAGCACATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATA 177605 |||||| ||| ||| || |||| | || |||||||| || || || || | ||||| Sbjct 78368 TTTGAAAGACAATTCTACGAACTCTCGTACCGAGTGTGTTTCTCCGGTGGCCAAGACATA 78309 Query 177606 TTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATG 177665 || || | | ||||| || ||||| | |||||| | || | |||||||| || || Sbjct 78308 GTCCTCTGGTTGATCTTGCTGCAGCATTAACCACATACCCTCTATGTAGTCCTTTGCGTG 78249 Query 177666 ACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAG-TTCAAGGAACTCTCTCTCACCTTTCA 177724 ||||||||||| ||||| ||||| ||||| | || | || || || Sbjct 78248 ACCCCAGTCTCGTTTCGCGTTCAGGTTTCCGAGATACACTGTTTGCT-GCTTGCCGAGGT 78190 Query 177725 CAATTTGTTTGACGCCATCAGTAATCTTCTTTGTGACAAA-GTCGGCACCTCGTCTCGGT 177783 |||| | ||| || |||||| ||| | || ||||| ||||| ||| | ||| || Sbjct 78189 GAATTCGCGCCACGGCACGAGTAATTTTCCTAGTCACAAACGTCGG-ACCCCTTCTAGGG 78131 Query 177784 GATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTT 177843 |||||||| ||||| || || || || ||| |||| || | ||||| ||| || Sbjct 78130 GATTCGTGATTGAACAGAATACCATTACATGCAAACATGTTGTATGCTTCTCTGTAGTTG 78071 Query 177844 TTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGT 177903 | | | |||| || | ||||| ||| | || || || || ||||| ||| Sbjct 78070 ATTATGTTCCAGAAGCCGAACTGTTTGGCTACGGCGTAAGGAGAGCGCGGATAGAACGGT 78011 Query 177904 GTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGG 177963 |||| || ||||| ||| | ||| ||||||| ||| ||| || || || ||||| Sbjct 78010 GTCTTTTCGGTTTGAGGAATCTCTTGGACTTTGCCATACAGTTCACTCGTAGATGCTTGA 77951 Query 177964 TATACACGATACTT 177977 || | ||| |||| Sbjct 77950 TAAAATCGACACTT 77937 >seq146 Length=179389 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 ||||| || |||||| ||||| ||||||| | | ||||||| | ||| | ||| Sbjct 61280 GATGGACTGAAGCCTGCACAGCGGAAAGTTCTCTTCAGTTGCTTCAAACGGAACTTAAAG 61339 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482 | ||||| ||||| || || || || | ||||| |||| | |||| ||||||||| Sbjct 61340 AAAGAAATCAAGGTTGCTCAGCTTGCTGGTTATGTTTCGGAGCATGCTGCCTACCACCAT 61399 Query 14483 GGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAAC 14542 || ||| | || | || | || || ||| | |||| | | | || || ||| Sbjct 61400 GGCGAAATGTCACTTGCTGCAACTATCGTTGGGATGGCGCAGAATTTTGTAGGATCCAAC 61459 Query 14543 AACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGAT 14602 ||| | ||||| || | ||| | ||||| |||||||| || || ||||||||||| ||| Sbjct 61460 AACCTGAACCTGCTGGTACCATCCGGTCAGTTTGGTACACGCCTGATGGGTGGTAAAGAT 61519 Query 14603 GC 14604 || Sbjct 61520 GC 61521 >seq4924 Length=885 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 177546 TTTGAAGCACATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATA 177605 |||||| ||| ||| || |||| | || |||||||| || || || || | ||||| Sbjct 159 TTTGAAAGACAATTCTACGAACTCTCGTACCGAGTGTGTTTCTCCGGTGGCCAAGACATA 100 Query 177606 TTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATG 177665 || || | | ||||| || ||||| | |||||| | || | |||||||| || || Sbjct 99 GTCCTCTGGTTGATCTTGCTGCAGCATTAACCACATACCCTCTATGTAGTCCTTTGCGTG 40 Query 177666 ACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAG 177698 ||||||||||| ||||| ||||| ||||| Sbjct 39 ACCCCAGTCTCGTTTCGCGTTCAGGTTTCCGAG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596509510527040