Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2397 96.9 5e-15 seq80 96.9 5e-15 >seq2397 Length=4497 Score = 96.9 bits (106), Expect = 5e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 ||||| || || || || || || || |||| || |||| ||| || |||||| | Sbjct 1800 ACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAGAATGTGAAACAG 1859 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| ||||| ||||||||||| ||||| || || || ||||||||| ||| || ||| Sbjct 1860 AAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATTTTTGCTGGAAAG 1919 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 || | || ||| | ||| | || ||||| ||||| || || | || || ||| Sbjct 1920 CAATTGGAGGATGGACGTACTCTGTCTGATTACAATATCCAGAAGGAATCTACTCTGCAT 1979 Query 156027 TTAGTG 156032 |||||| Sbjct 1980 TTAGTG 1985 >seq80 Length=198448 Score = 96.9 bits (106), Expect = 5e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 ||||| || || || || || || || |||| || |||| ||| || |||||| | Sbjct 77205 ACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAGAATGTGAAACAG 77146 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| ||||| ||||||||||| ||||| || || || ||||||||| ||| || || Sbjct 77145 AAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATTTTTGCTGGAAAA 77086 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 || | || ||| | ||| |||| ||||| ||||| || || | || || ||| Sbjct 77085 CAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAATCTACTCTGCAT 77026 Query 156027 TTAGTG 156032 |||||| Sbjct 77025 TTAGTG 77020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731798282192800