Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq80 141 2e-28 seq2349 113 9e-20 seq263 107 4e-18 >seq80 Length=198448 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | || || | |||||||| | ||||| || || |||||| ||||||||| Sbjct 77003 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAT 77062 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || ||| |||| ||||||||||| |||||||| || |||| ||| |||||||| || Sbjct 77063 AGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 77122 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| ||||| | ||| ||||| || | ||| || | ||| || Sbjct 77123 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 77182 Query 192490 TCTAGAGTAATGGTTTTACCAGT 192512 || | || ||||| |||||||| Sbjct 77183 TCCAAGGTGATGGTCTTACCAGT 77205 >seq2349 Length=20186 Score = 113 bits (124), Expect = 9e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||| ||||| | || || || || || | |||||| ||| |||||||| || Sbjct 7469 ACCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGA 7528 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||||||||||||||| || || |||| ||| ||||| || || Sbjct 7529 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGG 7588 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| ||||| || ||||| | ||| || || || | ||| || | || || Sbjct 7589 GATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCAC 7648 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 || || || ||||| || || || || || Sbjct 7649 ATCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq263 Length=166476 Score = 107 bits (118), Expect = 4e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGA 192355 || ||| ||| | |||||| | || || | ||| | ||||||||||| || || || Sbjct 119201 TTGGTTCAATCACACCACCACGGAGGCGCAGTACGAGATGTAAAGTAGATTCCTTCTGGA 119142 Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 | || || || |||| || ||| |||| || | || || || ||||||||||||| || Sbjct 119141 TGTTGTAGTCCGATAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATTAATCGCT 119082 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 | |||||||| || |||||||| ||||| || ||||| | || ||||| Sbjct 119081 GCTGATCAGGCGGGATTCCTTCCTTATCCTGGATTTTCTGCTTAACATT 119033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984378359208300