Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq80 132 9e-26 seq2397 118 2e-21 seq2349 100 5e-16 seq263 84.2 4e-11 >seq80 Length=198448 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | || || | |||||||| | ||||| || || ||||| ||||| ||| Sbjct 77003 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAT 77062 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || ||| | || ||||||||||| ||||||||||| |||| ||| || ||||| || Sbjct 77063 AGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 77122 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| ||||| | ||| ||||| || ||||| || | ||| || Sbjct 77123 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 77182 Query 172023 TCTAGAGTAATGGTTTTACCAGT 172045 || | || ||||| |||||||| Sbjct 77183 TCCAAGGTGATGGTCTTACCAGT 77205 >seq2397 Length=4497 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | || || | |||||||| | ||||| || || ||||| ||||| || Sbjct 2002 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAC 1943 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || ||| | || |||||||| || ||||||||||| |||| ||| || || || || Sbjct 1942 AGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGA 1883 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| ||||| | ||| ||||| || ||||| || | ||| || Sbjct 1882 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 1823 Query 172023 TCTAGAGTAATGGTTTTACCAGT 172045 || | || ||||| |||||||| Sbjct 1822 TCCAAGGTGATGGTCTTACCAGT 1800 >seq2349 Length=20186 Score = 100 bits (110), Expect = 5e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||| || || | || || || || || | |||||| || |||||||| || Sbjct 7469 ACCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGA 7528 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || ||||||||||||||||| || || |||| ||| || || || || Sbjct 7529 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGG 7588 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| ||||| || ||||| | ||| || || || ||||| || | || || Sbjct 7589 GATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCAC 7648 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 || || || ||||| || || || || || Sbjct 7649 ATCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq263 Length=166476 Score = 84.2 bits (92), Expect = 4e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 171829 TTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888 || ||| || | |||||| | || || | ||| | ||||||||||| || || | Sbjct 119201 TTGGTTCAATCACACCACCACGGAGGCGCAGTACGAGATGTAAAGTAGATTCCTTCTGGA 119142 Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT 171948 | || || || |||| || ||| | || || | || || || ||||| ||||||| || Sbjct 119141 TGTTGTAGTCCGATAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATTAATCGCT 119082 Query 171949 GTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 | || ||||| || |||||||| ||||| || ||||| | || ||||| Sbjct 119081 GCTGATCAGGCGGGATTCCTTCCTTATCCTGGATTTTCTGCTTAACATT 119033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905044830176400