Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq360 91.5 4e-13 seq196 91.5 4e-13 >seq360 Length=58504 Score = 91.5 bits (100), Expect = 4e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 60121 CCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACC 60180 ||| ||||| |||||| || ||| ||||| || || | || |||||||| |||||||| Sbjct 9435 CCGCGTAATGCTGGATAGTTTTGTAAAAATGTATCTAGCCGAGGCTGCGTCTTTGCCACC 9376 Query 60181 CATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTAC 60240 | ||| |||||||| || ||| | ||||| || || | ||||| ||||| || Sbjct 9375 GGCTAAACGTGTTCCAAACTGACCGATAGGCTGCAACAGTGGTACATTGTTGGAGCCAAC 9316 Query 60241 GAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCC 60300 ||| | || || | | ||||| | | || | | | || || || ||||||||| | Sbjct 9315 GAAGTCGTGCGCCATATTGACAATGGTAGCAATAAGAGAAGCCTCTCCATGATGATATGC 9256 Query 60301 AGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 | | |||| | ||| || || ||||| ||||||||||| Sbjct 9255 TGTTTTCTCTGCACAATAGCCGGCCAACTGTGCAACTTTAATTTC 9211 >seq196 Length=210786 Score = 91.5 bits (100), Expect = 4e-13 Identities = 118/161 (73%), Gaps = 9/161 (6%) Strand=Plus/Minus Query 303642 ATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCAACGTTCATCCG 303701 ||||||||||||||| ||||| || |||||||| ||| ||||| | | ||||| || Sbjct 179976 ATTCATCTCATCACCATCAAAGTCCGCATTATAAGGCGTTGTGCATGTTAGGTTCAGACG 179917 Query 303702 GAAAGTATC--ACCCT-GCATCATAACACGGGCTTTATGACACATCATAGACATTCTGTG 303758 ||| || ||||| ||| | |||||| || ||||| || ||||| | || Sbjct 179916 GAAGGTGCTGTACCCTAGCACTCTCACACGG------TGGCACATAATGGACATCTTATG 179863 Query 303759 TAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGTTTA 303799 ||| ||||||| || |||||||||||| ||| ||||||| Sbjct 179862 CAGACTTGGCTGTCGGTTGAAAAGCACGTAGTCCCCGTTTA 179822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471665644951546