Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq470 136 4e-27 seq826 131 2e-25 seq1543 129 5e-25 seq2100 127 2e-24 seq3538 123 2e-23 seq2397 113 4e-20 seq80 113 4e-20 seq3592 111 1e-19 seq2349 111 1e-19 seq7 109 5e-19 seq1217 105 6e-18 >seq470 Length=818 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || ||||| | Sbjct 785 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 726 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 725 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 666 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| ||||| || |||| ||| ||| | || || || || Sbjct 665 CAACGTCTGATTTTTGCGGGGAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 606 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || |||||||| ||||| Sbjct 605 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCG 571 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || ||||| | Sbjct 557 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 498 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 497 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 438 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 437 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 378 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || |||||||| ||||| Sbjct 377 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCG 343 Score = 123 bits (136), Expect = 2e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || ||||| | Sbjct 329 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 270 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 269 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 210 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 209 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 150 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| | |||||||| || || |||||||| ||||| Sbjct 149 ATTYAGAAGGAATCAACTCTCCACTTGGTCTTGCG 115 >seq826 Length=494 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || | || || ||||| | Sbjct 232 ATGCAGATCTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 291 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 292 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 351 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 352 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 411 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || |||||||| ||||| Sbjct 412 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCG 446 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || ||||| | Sbjct 4 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 63 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 64 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 123 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 124 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 183 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || |||||||| ||||| Sbjct 184 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCG 218 >seq1543 Length=600 Score = 129 bits (142), Expect = 5e-25 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || ||||| | Sbjct 412 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 353 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 352 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 293 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 292 CAACGTCTGATTTTTGCGGGRAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 233 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || |||||||| ||||| Sbjct 232 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCG 198 >seq2100 Length=597 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || || || || || || ||||| | Sbjct 168 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 227 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 228 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 287 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 288 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 347 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||||||||| || |||||||| ||||| Sbjct 348 ATTCAGAAGGAATCGACTCTCCACTTGGTCTTGCG 382 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || ||||| | Sbjct 396 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 455 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 456 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 515 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 516 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 575 Query 24884 ATTCAAAAGGAATCGACACT 24903 ||||| ||||||||||| || Sbjct 576 ATTCAGAAGGAATCGACTCT 595 >seq3538 Length=489 Score = 123 bits (136), Expect = 2e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || || || || || || ||||| | Sbjct 434 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 375 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | | | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 374 GACACGATTGMGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 315 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 314 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 255 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||||||||| || |||||||| ||||| Sbjct 254 ATTCAGAAGGAATCGACTCTCCACTTGGTCTTGCG 220 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || || || || || || ||||| | Sbjct 206 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 147 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 146 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 86 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 27 Query 24884 ATTCAAAAGGAATCGACACTACACTT 24909 ||||| ||||||||||| || ||||| Sbjct 26 ATTCAGAAGGAATCGACTCTCCACTT 1 >seq2397 Length=4497 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || || || | || || |||||| | || || | || | Sbjct 1791 AAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAGAAT 1850 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||||| || ||||||||||||||||| || ||||| ||||| || || ||||| ||| Sbjct 1851 GTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATTTTT 1910 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || || |||||||| | | |||| ||||| || || || |||||||| Sbjct 1911 GCTGGAAAGCAATTGGAGGATGGACGTACTCTGTCTGATTACAATATCCAGAAGGAATCT 1970 Query 24899 ACACTACACTTGGTGTTGCG 24918 || || || || ||| |||| Sbjct 1971 ACTCTGCATTTAGTGCTGCG 1990 >seq80 Length=198448 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || || || | || || |||||| | || || | || | Sbjct 77214 AAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAGAAT 77155 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||||| || ||||||||||||||||| || ||||| ||||| || || ||||| ||| Sbjct 77154 GTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATTTTT 77095 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || ||||| |||||||| | | | || ||||| || || || |||||||| Sbjct 77094 GCTGGAAAACAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAATCT 77035 Query 24899 ACACTACACTTGGTGTTGCG 24918 || || || || ||| |||| Sbjct 77034 ACTCTGCATTTAGTGCTGCG 77015 >seq3592 Length=385 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | || || ||||| | Sbjct 180 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCTTGGACGTGGAAGCGTCG 239 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 240 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 299 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| ||||| || || || |||| ||| ||| | || || || || Sbjct 300 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 359 Query 24884 ATTCAAAAGGAATCGACACTACACTT 24909 ||||| |||||||| || || ||||| Sbjct 360 ATTCAGAAGGAATCAACTCTCCACTT 385 >seq2349 Length=20186 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || ||| | || || | || | || ||||| Sbjct 7672 ACCGGCAAGACCATCACACTGGATGTGGAGGCCTCTGATACCATTGAGAACGTGAAACAG 7613 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || ||||| || || ||||| || ||||| ||||| || || ||||| || || || ||| Sbjct 7612 AAAATCCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGATTGATATTCGCTGGTAAA 7553 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| ||| | | | |||| ||||||||||| || || || || ||| | ||| Sbjct 7552 CAATTGGAAGATGGGCGTACTTTGTCCGATTATAACATCCAGAAAGAGTCCACATTGCAC 7493 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGG 24933 |||||| | || |||| ||||| || Sbjct 7492 TTGGTGCTCCGTCTGCGAGGAGGTGG 7467 >seq7 Length=130303 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || |||||||| || || ||||| || |||||| ||||||| | || | || Sbjct 35703 ACTCTCACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACGTG 35762 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || || || ||||| ||||||||||| || || || ||||| ||| | | || || || Sbjct 35763 AAGCAGAAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAGCAAAGGCTCATTTTCGCA 35822 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 ||||| |||||||| || | | | || || || ||||| || |||||||| || Sbjct 35823 GGGAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAACC 35882 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| ||||| | || || ||| Sbjct 35883 TTGCATTTGGTCTTGCGTCTTCGTGGTGGC 35912 >seq1217 Length=25202 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 139118 CGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTT 139177 || |||| || |||||||||| |||||| || |||||||| ||||| | |||||||| Sbjct 14906 CGGTGTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTT 14965 Query 139178 GATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTT 139237 |||||||||| || || | ||| ||||| ||||||||||| ||||| ||||| | || Sbjct 14966 GATTGCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTT 15025 Query 139238 G 139238 | Sbjct 15026 G 15026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449852284064240