Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 123 4e-22 seq1956 91.5 2e-12 seq792 89.7 8e-12 seq409 87.8 3e-11 >seq5 Length=391144 Score = 123 bits (136), Expect = 4e-22 Identities = 216/313 (69%), Gaps = 5/313 (2%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 |||||||| || |||||||| || ||||| || || | ||| || | ||||||||| Sbjct 174548 ATCAATTCATTAGAGAAGCAGAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATT 174607 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 | ||||| |||||||||||||| || || || || ||||| | | | || || Sbjct 174608 GAGCAGAATGAACCCGAGAAAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCA 174667 Query 794476 GCAAAAGTGTC-CAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCT 794534 | ||| | | | | ||| | || |||| | || |||||| |||||||| | Sbjct 174668 GGAAAGGAGGCATAAGCCGGATCTG----TCCATTGCAGCGCCCAGTCTGCCTTCCGTTT 174723 Query 794535 CACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGAC 794594 ||| |||| | || | ||| ||| || |||||||| ||||| | || || | Sbjct 174724 CACACAGGGGATGGTTTGGATTGCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAAT 174783 Query 794595 GTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAA 794654 ||| |||||||||||||| || ||| || || ||||||||||| | ||||| ||||| Sbjct 174784 GTAAGTGTCGATGAGGAGTGAATAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAA 174843 Query 794655 GCCATAAAAGCAG 794667 || || || ||| Sbjct 174844 ACCGTAGAAACAG 174856 >seq1956 Length=1652 Score = 91.5 bits (100), Expect = 2e-12 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || || ||||| ||||| || || || ||| |||| ||||| ||| | | | Sbjct 603 ACTTGGTCACAGCTTTGGTCCCCTCAGAAACAGCATGCTTGGCAAGTTCACCGGGGAGAA 662 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG---C 1485589 || || || | |||||||| || ||| || || | || || |||| | || | Sbjct 663 CCAACCGAACAGAGGTCTGGACTTCTCGGCTG--GAAAGAGTAGC-CTTGCTGTTGTAAC 719 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| || || ||| ||| | | |||| || |||||||| || ||||||| Sbjct 720 GGGCAAGGCGACCAGCTTCGTTGCACAGTCTCTCGAACACGTCGTTGATGAATGAGTTCA 779 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||| | || |||||||| || || ||||| | ||| || ||||| Sbjct 780 TGATGCTCATGGCCTTCTTGGAGATACCAGTCTCAGGGTGGATCTGTTTCAGCAC 834 >seq792 Length=22785 Score = 89.7 bits (98), Expect = 8e-12 Identities = 168/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || |||| || || || ||||| ||||| || || || ||| |||| ||||| Sbjct 1345 GGCAGAGGTGAACTTAGTCACAGCTTTGGTCCCCTCAGAAACAGCATGCTTGGCAAGTTC 1404 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCG 1485578 ||| | | | || || || | |||||||| || ||| || | ||| |||| Sbjct 1405 ACCGGGGAGAACCAACCGAACAGAGGTCTGGACTTCTCGGCTGGAAAGAGTGGCCTTGCT 1464 Query 1485579 CTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 |||| | || || ||||| || || ||| ||| | | |||| || |||||||| Sbjct 1465 GTTGTAA---CGGGCAAGGCGACCAGCTTCGTTGCACAGTCTCTCGAACACGTCGTTGAT 1521 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || ||||||||||| ||| | || |||||||| || || ||||| | ||| || Sbjct 1522 GAATGAGTTCATGATGCTCATGGCCTTCTTGGAGATACCAGTCTCAGGGTGGATCTGTTT 1581 Query 1485699 GAGCAC 1485704 ||||| Sbjct 1582 CAGCAC 1587 >seq409 Length=78043 Score = 87.8 bits (96), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || || ||||| ||||| || || || ||| |||| ||||| ||| | | | Sbjct 1987 ACTTAGTCACAGCTTTGGTCCCCTCAGAAACAGCATGCTTGGCAAGTTCACCGGGGAGAA 2046 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGC 1485589 || || || | |||||||| || ||| || | ||| |||| |||| | | Sbjct 2047 CCAACCGAACAGAGGTCTGGACTTCTCGGCTGGAAAGAGTGGCCTTGCTGTTGTAA---C 2103 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| || || ||| ||| | | |||| || |||||||| || ||||||| Sbjct 2104 GGGCAAGGCGACCAGCTTCGTTGCACAGTCTCTCGAACACGTCGTTGATGAATGAGTTCA 2163 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||| | || |||||||| || || ||||| | ||| || ||||| Sbjct 2164 TGATGCTCATGGCCTTCTTGGAGATACCAGTCTCAGGGTGGATCTGTTTCAGCAC 2218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915389233787462