Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq80 102 1e-16 seq2397 93.3 7e-14 >seq80 Length=198448 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| | ||||| ||| |||||||||||||| || ||||| Sbjct 77169 GATACCATTGAGAATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 77110 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | |||||||| || |||||||| || ||| | || || | ||||| ||| Sbjct 77109 CAGCGATTGATTTTTGCTGGAAAACAATTGGAGGATGGACGTACTCTATCTGATTACAAT 77050 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || ||||| ||| | |||||||| Sbjct 77049 ATCCAGAAGGAATCTACTCTGCATTTAGT 77021 >seq2397 Length=4497 Score = 93.3 bits (102), Expect = 7e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| | ||||| ||| |||||||||||||| || ||||| Sbjct 1836 GATACCATTGAGAATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 1895 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | |||||||| || || ||||| || ||| | || | | ||||| ||| Sbjct 1896 CAGCGATTGATTTTTGCTGGAAAGCAATTGGAGGATGGACGTACTCTGTCTGATTACAAT 1955 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || ||||| ||| | |||||||| Sbjct 1956 ATCCAGAAGGAATCTACTCTGCATTTAGT 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786087213389360