Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq250 118 8e-22 seq2397 109 4e-19 seq80 109 4e-19 seq2349 107 1e-18 seq7 86.0 5e-12 >seq250 Length=105897 Score = 118 bits (130), Expect = 8e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| |||||||| || || || || || || | || ||||| Sbjct 9435 ACGGAGTACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCC 9494 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||||| ||||||||||| ||||| || || || Sbjct 9495 ATCCTCCAACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTT 9554 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || |||||| |||| | ||||||||| ||| || || ||||| || Sbjct 9555 GTCCTGGATTTTCTGCTTGACATTTTCGATGGTGTCAGAAGCTTCCACATCCAGAGTGAT 9614 Query 29751 AGT 29753 || Sbjct 9615 GGT 9617 >seq2397 Length=4497 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||| ||||| || || ||||| || || || || ||||| | | || || | Sbjct 1990 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCA 1931 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| | ||||||| ||||||||||| ||||| || |||||| Sbjct 1930 TCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTG 1871 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||||| ||| | || | || || || ||| || || | || || Sbjct 1870 TCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATG 1811 Query 29752 GTTTTGCCAGTTAAGGTTTTAAC 29774 || || ||||| | ||| || || Sbjct 1810 GTCTTACCAGTAAGGGTCTTGAC 1788 >seq80 Length=198448 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||| ||||| || || ||||| || || || || ||||| | | || || | Sbjct 77015 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCA 77074 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| |||||| | ||||||| |||||||| || ||||| || |||||| Sbjct 77075 TCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTG 77134 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||||| ||| | || | || || || ||| || || | || || Sbjct 77135 TCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATG 77194 Query 29752 GTTTTGCCAGTTAAGGTTTTAAC 29774 || || ||||| | ||| || || Sbjct 77195 GTCTTACCAGTAAGGGTCTTGAC 77217 >seq2349 Length=20186 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| |||||||| || | ||||| ||||| || ||||||||||| | Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| ||||| ||||||||| ||||||||||| || Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | ||| ||||| || | || | || ||||| || || Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCACA 7649 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 || || || || || ||||| || || || Sbjct 7650 TCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq7 Length=130303 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||| | || ||||| || || ||||| || || | | ||||| Sbjct 35900 ACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCC 35841 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || || || | || | ||||||||||| ||||| || || ||||| Sbjct 35840 GTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTT 35781 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || || | || | |||||| || ||| || || || || || Sbjct 35780 GTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGAT 35721 Query 29751 AGTTTTGCCAGT 29762 ||||| ||||| Sbjct 35720 GGTTTTACCAGT 35709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385181368826178