Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1110 255 4e-62 seq7994 116 3e-20 seq196 86.0 5e-11 >seq1110 Length=22515 Score = 255 bits (282), Expect = 4e-62 Identities = 918/1404 (65%), Gaps = 59/1404 (4%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || |||||||||||||| ||||| | |||| | || || ||||| || || | Sbjct 8460 GCACTGACGTTAAGAATACCATTCGCATCGATATCATAGGTAACCTCAATCTGGGGAATA 8519 Query 281486 CCTCTCTGAGCAGGTGGG--ATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 |||| | || | ||| || || || | || || | || ||| || || || | Sbjct 8520 CCTCG--GGCCATGGGGGGAATACCGTCTAGATGGAACTTCCCTAGAAGGTTGTTGTCCT 8577 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAA 281602 | || | ||||| |||||||||| ||| || |||| | ||| ||| || || || Sbjct 8578 TGGTCATAGAGCGTTCTCCCTCGAAAACTTGAATCAGTA-CACCAGGTTGGTTGTCAGAG 8636 Query 281603 TAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATT 281661 || || | ||| |||| | || || || ||||| || ||||||| ||| | | Sbjct 8637 TATGTGGAGAATG-TCTGTGTCTTCTTGCAGGGAATGGTCGTGTTTCGGGGAATGAGTGT 8695 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 ||||| | ||||||||||||||| | ||| | || | ||||| ||||| | ||| | Sbjct 8696 TGTCATCACACCACCAGCTGTTTCGAGACCCATGGACAAAGGAGCTACATCCAATAGCAA 8755 Query 281722 AATATTTTGAAGTTTTTCA------TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 | || | | ||| | |||||| ||| |||| ||||||||||| | | Sbjct 8756 CAAATCATCCAATTTCCCTCCCTTGTCAGTT---CCAGCAAGGATAGCTGCTTGTACTGT 8812 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTT-TTACCATT 281832 ||| || || || || ||||||||||| || | | || || || || || ||||| Sbjct 8813 AGCTCCGTAGGCTACGGCTTCATCAGGGTTGATGCTCTTACA---AGCTTCCTTTCCATT 8869 Query 281833 GAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATA 281891 |||| | | ||||| | | ||| | ||| || ||||| | || |||||||| | | Sbjct 8870 GAAATACTCAGAAAGCATAT-TCTGGATCTTGGGGATACGGGTAGAACCTCCAACAAGAA 8928 Query 281892 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951 | |||||||| || | | ||| ||| || | ||| | |||||| || || || | Sbjct 8929 CGATTTCATGTACGTCTCCTTTGCCCATCTTGGCATCGCGAAGAACTTTATCCACAGGCT 8988 Query 281952 CAAGAC-CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 282010 || | || ||| | ||| || | ||||||||| ||| | |||||| || Sbjct 8989 GAACTGTCTTCTTGAAATA-GTCCATGCACATTTCTTCGAAACGAGCACGAGTAAGTGTT 9047 Query 282011 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 282070 | | ||||| | |||||| || | || || | ||| || || ||||| || Sbjct 9048 GTACTGTAATCTACTCCTTCAAAGAGTGAGTCGATTTCGATGAAAGCCTGAGTACTTGAG 9107 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 282130 || || | ||||| || || || ||||| || || | | || | || || | | Sbjct 9108 GAAAGCGTGCGTTTTGCCCGCTCGCATGCGGTTCTCAAACGACGAATGGA----GC-GTT 9162 Query 282131 TGATTCAAATCTGTT--TTATATT--TTCT-CTTGAAATCTTCAACACACCATGTTACAA 282185 | ||| | | | | || | |||| |||||| || ||| || | ||| | Sbjct 9163 GGTTTCCACTTGGGTCCTTGCGGTGCTTCTTCTTGAAGTCAGCAATGCAATACTCTACCA 9222 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 ||| || || |||||||| |||||||| | |||| || | |||||| | |||| | Sbjct 9223 AACGGTTGTCGAAATCTTCTCCTCCCAAGTGGGTATCACCAGCAGTAGCTTTCACTTCAA 9282 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 ||| ||||||||||| || | | || |||||| ||||| ||||| | ||| |||| Sbjct 9283 AAATTCCATCTTCAATAGTGAGCAAAGAAACATCGAAAGTTCCTCCACCAAGATCGAAAA 9342 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | | ||| | ||||| | || ||| || || | ||| || || | || || || Sbjct 9343 TCA--ACA--CGTTTCTCTCTCCACCTTTCTTGTCCAAACCGTAGGCGATGGCGGCTGCT 9398 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || |||||||| ||||| | || ||||| | ||| || || |||||||| ||| Sbjct 9399 GTGGGTTCATTGATAATGCGCAGTACATTCAAGTTAGCGATAGACCCGGCATCTTTGGTG 9458 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 ||||| | |||||| ||||| || || ||||| ||||| | ||| || | | |||||| Sbjct 9459 GCTTGACGTTGTGAGTCGTTGAAGTACGCAGGGACAGTCACAACCGCGTTTCGGACTTCT 9518 Query 282485 TTTCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 ||||| || ||| || | | |||||| || | || | ||| ||||| | | Sbjct 9519 CCTCCAAGGAAA---CTTTCGGCAATCTCTTTCATCTTGGTCAAGACCATGGATGAGACT 9575 Query 282542 TGTTCTGGAGAATATTGCTTGGATTCATT---TTGATATGATA-CTTCAAAATATGGTTT 282597 | || | || | | | || | || | ||| || | | || ||| || ||| || Sbjct 9576 TCCTCCGCAGCAAACT--TTACAGTCTCTCCCTTG-TAAGTCACCTGCAACAT-TGGCTT 9631 Query 282598 ---ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG 282654 || | || || || | |||||||| | |||||||||| ||| ||| | Sbjct 9632 GTCGTTGTCTCCACGAACTACGGTGAATGGCCAGTGCTTCATATCTGCTTGTACAACAGG 9691 Query 282655 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAC 282714 |||| ||| | | ||||| | || || |||||||| | ||| |||| || || | Sbjct 9692 GTCAGAAAACTTGCGGCCAATGAGACGCTTGGCATCAAAGACAGTGTTGGAGGGGTTCAT 9751 Query 282715 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 282774 || | || | ||||| ||||||||||||||| | || ||||| || || | ||||| Sbjct 9752 CGCCGTCTGGTTCTTGGCGGCATCTCCAATCAGACGCTCGGTCTCAGTGAACGCCACATA 9811 Query 282775 TGATGGAGTTGTGCGATTACCTTG 282798 || ||||| || |||||||| || Sbjct 9812 AGAAGGAGTGGTACGATTACCCTG 9835 >seq7994 Length=787 Score = 116 bits (128), Expect = 3e-20 Identities = 321/487 (66%), Gaps = 9/487 (2%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| |||| | || |||||||| || || | ||||| ||||| || ||||| || Sbjct 676 GCACTCACGTGCAGGATACCATTAGCGTCGACGTCAAAAGTGACCTCGATTTGGGGAGTA 617 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| | ||||||||| || ||||| | || | |||| || || || || Sbjct 616 CCTCTTGGCATAGGTGGGATTCCATCCAAGTGGAACTTACCCAACAAGTTGTTGTCCTTG 557 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || |||||||| || | || || || | | |||||||| | ||| Sbjct 556 GTCATAGAGCGCTCACCCTCAAATACCTGAATCAACACACCGGGCTGATTATCAGCATAC 497 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || | ||| | || || || || || |||||||| | || |||| | || Sbjct 496 GTCGAGAAGGTT-TGGTTCTTCTTGCATGGGATGGTTGTGTTACGTTCGATAAGCGTAGT 438 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||| || ||||| ||||| || || ||||| | || || | || | | Sbjct 437 CATCACACCACCGGCAGTTTCCAAACCGAGGGATAGAGGGGCAACGTCCAGCAGAAGCAA 378 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACC 281781 | | || || | |||| | ||| || | |||||| ||||| |||| ||| || Sbjct 377 GTCATCCAGCTTCCCTCCAGTGTCACCGCCACTCAAAATAGCCGCTTGGATAGTAGCTCC 318 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 || |||||||| ||||||||||||| ||| | || || |||||||| | | Sbjct 317 GTAAGCAACAGCCTCATCAGGATTAATGTTTTTGCATGCTTCCTTGCCATTGAAGTATTC 258 Query 281842 TGAAAGAAGTTGTCTT--ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 ||| | ||| || | ||| || ||||||| |||||||| ||||| || || ||| Sbjct 257 CTCAAGCA--TGTTTTGGATCTTCGGGATACGAGTAGATCCTCCTACTAAGACGATCTCA 200 Query 281900 TGCACCT 281906 | |||| Sbjct 199 TCTACCT 193 >seq196 Length=210786 Score = 86.0 bits (94), Expect = 5e-11 Identities = 256/386 (66%), Gaps = 8/386 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACAT-TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 |||| | |||| ||||| |||| || || || | |||||||||||||| || || || Sbjct 41154 CGGCGGAAACATGTAAGA-TACCGTTAGCGTCAATTTCAAATGTGACTTCGATCTGGGGT 41096 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 ||||| |||| ||||| || || | | |||| |||| ||| | || || Sbjct 41095 GTGCCTCTGGGAGCCGGTGGAATACCGCTGAGTTCAAATTTTCCTAGAAGCTGGTTGTCC 41036 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 || || | || |||||||| ||||| ||||| | || | | |||||||| | Sbjct 41035 TTGGTCATGGATCTTTCACCCTGGAAAACCTGGATCATGACGGCTGGCTGATTATCCTGA 40976 Query 281603 TAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 281661 ||||| | || | ||||| | || || ||||| ||||| | | || | || Sbjct 40975 TAAGTGCTGAA-AGTCTGGCTCTTCTTGGTTGGAATGACAGTGTTACGGTTGATTAACTT 40917 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAG-GA 281720 |||||| | |||||| | ||||| | ||| | ||||| || || ||||| | || | Sbjct 40916 GGTCATTACACCACCGACGGTTTCAATACCCAATGAAAGGGGTGTCACATCGAGCAGCAA 40857 Query 281721 CAATATTTTGAAGTTT-TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCA 281779 ||| |||| |||| ||| | | || ||| || || || |||| | ||| ||| Sbjct 40856 CAAGTCTTTG--GTTTCTTCTTTCGCTTCACCGGAGAGGATTCCTCCTTGCACAGCGGCA 40799 Query 281780 CCATATGCAACAGCTTCATCAGGATT 281805 || || || || |||||||| || || Sbjct 40798 CCGTAAGCGACGGCTTCATCTGGGTT 40773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740234786253108