Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq2100 98.7 1e-15 seq1543 96.9 3e-15 seq3538 93.3 4e-14 seq2349 93.3 4e-14 seq218 93.3 4e-14 seq250 82.4 7e-11 >seq7 Length=130303 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| || || ||||| || ||||| ||| | ||| ||| || ||| Sbjct 35890 AAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGC 35831 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| ||||||||| ||||| || || ||||||||||| ||||| ||| Sbjct 35830 TGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTGTCCTGGATT 35771 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | | ||| | ||||||| || ||||| |||| ||||| |||||| || Sbjct 35770 TTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGATGGTTTTACCA 35711 Query 133635 GTCAGAGT 133642 || ||||| Sbjct 35710 GTGAGAGT 35703 >seq2100 Length=597 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||| || | || ||| | || || | ||||| || Sbjct 364 GTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA-TCTTCCAATTGCTTTCC 306 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || ||||| || ||||| || |||||||| || ||| || || || Sbjct 305 CGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTT 246 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | ||||| || | ||||| ||| || || |||| ||| Sbjct 245 GACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAAAGT 186 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 185 CTTGACAAAAATCTGCAT 168 >seq1543 Length=600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| ||||| |||| || || ||||| || ||||| || |||||||| || ||| Sbjct 39 TGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATT 98 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| |||||| | | ||||| || | ||||| ||| || || Sbjct 99 TTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCA 158 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || || ||||||||||| Sbjct 159 GTCAAAGTCTTGACAAAAATCTGCAT 184 >seq3538 Length=489 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||| || | || ||| | || || | ||||| || Sbjct 10 GTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA-TCTTCCAATTGCTTTCC 68 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || ||||| || ||||| || |||||||| || ||| || || || Sbjct 69 CGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTT 128 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | ||||| || | ||||| ||| || || |||| || Sbjct 129 GACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAATGT 188 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 189 CTTGACAAAAATCTGCAT 206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||| || | || ||| | || || | ||||| || Sbjct 238 GTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA-TCTTCCAATTGCTTTCC 296 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || ||||| || ||||| || |||||||| || ||| || || || Sbjct 297 CGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTT 356 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | | ||| |||||| | | ||||| || | ||||| ||| || || |||| || Sbjct 357 GACATTCKCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAATGT 416 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 417 CTTGACAAAAATCTGCAT 434 >seq2349 Length=20186 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || || |||||| || || | || || | || || || Sbjct 7500 GTGGACTCTTTCTGGATGTTATAATCGGACAAAGTACGCCCATCTTCCAATTGTTTACCA 7559 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||| || ||||||||||||||||| || ||| || || || Sbjct 7560 GCGAATATCAATCGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGGATTTTCTGTTTC 7619 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || | || |||||| || | |||| ||| |||||||||| ||| Sbjct 7620 ACGTTCTCAATGGTATCAGAGGCCTCCACATCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq218 Length=95557 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||| || | || ||| | || || | ||||| || Sbjct 87582 GTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA-TCTTCTAATTGCTTCCC 87524 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || ||||| || ||||| || |||||||| || ||| || || || Sbjct 87523 CGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTT 87464 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | ||||| || | ||||| ||| || || |||| || Sbjct 87463 GACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAATGT 87404 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 87403 CTTGACAAAAATCTGCAT 87386 >seq250 Length=105897 Score = 82.4 bits (90), Expect = 7e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || ||||| |||||||| ||| | ||| | | | ||||| | Sbjct 9445 AAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCA-TCCTCCAA 9503 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | |||||||| || || || |||||||||||||| ||| Sbjct 9504 CTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGAT 9563 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGT 133627 || ||||||| | || | ||||| | | ||||| || | |||| ||| Sbjct 9564 TTTCTGCTTGACATTTTCGATGGTGTCAGAAGCTTCCACATCCAGAGTGATGGT 9617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483372107439920