Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq250 113 1e-19 seq826 93.3 1e-13 seq3664 89.7 1e-12 seq470 89.7 1e-12 seq218 86.0 1e-11 seq3592 84.2 5e-11 seq3538 84.2 5e-11 seq2100 84.2 5e-11 >seq250 Length=105897 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAA 206262 || |||||| |||| |||||| ||||||||| ||||| || ||||| || || || Sbjct 9617 ACCATCACTCTGGATGTGGAAGCTTCTGACACCATCGAAAATGTCAAGCAGAAAATCCAG 9558 Query 206263 GAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAA 206322 || || ||||| ||| ||||| || || | || ||||| |||||||||||||| Sbjct 9557 GACAAGGAAGGCATTCCACCGGATCAGCAGCGATTGATTTTCGCTGGAAAGCAGTTGGAG 9498 Query 206323 GATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| | ||| | |||| ||||| ||||||| || || |||||||| Sbjct 9497 GATGGACGCACTCTTTCCGACTACAATATCCAGAAGGAATCCACTCTTCA 9448 >seq826 Length=494 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| ||||| |||||| || ||| Sbjct 235 CAGATCTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCGGAC 294 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || || || || || || || || ||||||||| || || ||| Sbjct 295 ACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 354 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| ||||||||||| | ||| | | || ||||| | Sbjct 355 CGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATT 414 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || ||||| ||| | || ||| | || ||| Sbjct 415 CAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 453 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| |||| |||||| || ||| Sbjct 7 CAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCGGAC 66 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || || || || || || || ||||||||| || || ||| Sbjct 67 ACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 126 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| ||||||||||| | ||| | | || ||||| | Sbjct 127 CGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATT 186 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || ||||| ||| | || ||| | || ||| Sbjct 187 CAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 225 >seq3664 Length=1078 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || ||||| ||||| |||||| || |||||| | Sbjct 860 TTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCGGACACAAT 919 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || || || || || || || || ||||||||| || || ||| | || Sbjct 920 TGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAACGTCT 979 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || |||||||| ||||||||||| | ||| | | || ||||| | ||||| Sbjct 980 GATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATTCAGAA 1039 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| ||| | || ||| | || ||| Sbjct 1040 GGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 1073 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || ||||| ||||| |||||| || ||||| | Sbjct 632 TTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCGGACACGAT 691 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || || || || || || || || ||||||||| || || ||| | || Sbjct 692 TGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAACGTCT 751 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || |||||||| ||||||||||| | ||| | | || ||||| | ||||| Sbjct 752 GATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATTCAGAA 811 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| ||| | || ||| | || ||| Sbjct 812 GGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 845 >seq470 Length=818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| |||| |||||| || ||| Sbjct 554 CAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCGGAC 495 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || || || || || || || || ||||||||| || || ||| Sbjct 494 ACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 435 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| ||||||||||| | ||| | | || ||||| | Sbjct 434 CGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATT 375 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || ||||| ||| | || ||| | || ||| Sbjct 374 CAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 336 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| |||| |||||| || ||| Sbjct 782 CAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCGGAC 723 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || || || || || || || || ||||||||| || || ||| Sbjct 722 ACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 663 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||| ||||||||||| | ||| | | || ||||| | Sbjct 662 CGTCTGATTTTTGCGGGGAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATT 603 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || ||||| ||| | || ||| | || ||| Sbjct 602 CAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 564 >seq218 Length=95557 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || ||||| |||| |||||| || |||||| | Sbjct 87166 TTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCGGACACAAT 87225 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || || || || || || || || ||||||||| || || ||| | || Sbjct 87226 TGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAACGTCT 87285 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || |||||||| ||||||||||| | ||| | | || ||||| | ||||| Sbjct 87286 GATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATTCAGAA 87345 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| ||| | || ||| | || ||| Sbjct 87346 GGAATCAACTCTCCACTTGGTCTTGCGTCTCCGA 87379 >seq3592 Length=385 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| ||||| |||||| || ||| Sbjct 183 CAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCTTGGACGTGGAAGCGTCGGAC 242 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || || || || || || || ||||||||| || || ||| Sbjct 243 ACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 302 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| ||||||||||| | ||| | | || ||||| | Sbjct 303 CGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATT 362 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || || ||||| ||| Sbjct 363 CAGAAGGAATCAACTCTCCAC 383 >seq3538 Length=489 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| |||| |||||| || ||| Sbjct 431 CAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCGGAC 372 Query 206233 ACAGT--CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 || | |||| || || || || || || || || ||||||||| || || | Sbjct 371 ACGATTGMGAAT--GTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 314 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 || | || || || || |||||||| ||||||||||| | ||| | | || ||||| Sbjct 313 AACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATA 254 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | ||||| || || ||||| ||| | || ||| | || ||| Sbjct 253 TTCAGAAGGAATCGACTCTCCACTTGGTCTTGCGTCTCCGA 213 >seq2100 Length=597 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| |||| |||||| || ||| Sbjct 171 CAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCGGAC 230 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || || || || || || || ||||||||| || || ||| Sbjct 231 ACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 290 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| ||||||||||| | ||| | | || ||||| | Sbjct 291 CGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAATATT 350 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || ||||| ||| | || ||| | || ||| Sbjct 351 CAGAAGGAATCGACTCTCCACTTGGTCTTGCGTCTCCGA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181698785127418