Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1217 95.1 1e-14 seq7 89.7 5e-13 >seq1217 Length=25202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 147469 GCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGG 147528 || ||||||||||| || ||||| || | || |||||| || ||||||| |||| | Sbjct 14875 GCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGTGTACTCTACAATTTCGGTACACAAG 14934 Query 147529 TTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTG 147588 ||| ||| || || || | |||||| |||||||||||| |||||||| || ||| Sbjct 14935 TTGGAGCACTTGATTGTACCAAGATTTTGTTGATTGCTTTTCGCATTGCACGAATCCTTG 14994 Query 147589 AAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 ||||||| ||||| ||| || || | ||| Sbjct 14995 TAGAGCATATACGGAGTGCCTGTTTCAATTTG 15026 >seq7 Length=130303 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | |||| || || || |||||||||||| | || || Sbjct 35899 CGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 35840 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | || || | || ||||| || || ||||||||||| Sbjct 35839 TCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTG 35780 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | ||| |||| | ||||| |||| || | Sbjct 35779 TCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGATG 35720 Query 132089 GTTTTACCAGTCAGAGT 132105 ||||||||||| ||||| Sbjct 35719 GTTTTACCAGTGAGAGT 35703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476563193336880