Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 seq3664 95.1 1e-14 seq826 89.7 5e-13 seq218 89.7 5e-13 seq3538 86.0 6e-12 seq2100 86.0 6e-12 seq1543 86.0 6e-12 >seq7 Length=130303 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258 || || ||| | ||||| |||| || |||||| ||| ||||||||| | || || || Sbjct 35709 ACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACGTGAAGCAG 35768 Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 ||||| || ||||| || || ||||| ||||||||||| ||||||| || || || Sbjct 35769 AAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAGCAAAGGCTCATTTTCGCAGGGAAG 35828 Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 || || ||||| | | | | || ||| ||||| || || || ||||| ||| | ||| Sbjct 35829 CAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAACCTTGCAT 35888 Query 25379 TTAGTGTT 25386 || || || Sbjct 35889 TTGGTCTT 35896 >seq3664 Length=1078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| ||||| || | ||||| | || || ||||| Sbjct 624 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 683 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 684 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 743 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 744 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 803 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 804 ATTCAGAAGGAATCAAC 820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| ||||| || | ||||| | || || ||||| Sbjct 852 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 911 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 912 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 971 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 972 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 1031 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 1032 ATTCAGAAGGAATCAAC 1048 >seq826 Length=494 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| ||||| || | ||||| | || || ||||| Sbjct 232 ATGCAGATCTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 291 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 292 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 351 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 352 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 411 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 412 ATTCAGAAGGAATCAAC 428 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 4 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 63 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 64 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 123 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 124 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 183 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 184 ATTCAGAAGGAATCAAC 200 >seq218 Length=95557 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 87158 ATGCAAATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 87217 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 87218 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87277 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 87278 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 87337 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 87338 ATTCAGAAGGAATCAAC 87354 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 87386 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 87445 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 87446 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87505 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 87506 CAACGTCTGATTTTTGCGGGGAAGCAATTAGAAGATGGTCGAACTCTTTCTGACTACAAT 87565 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 87566 ATTCAGAAGGAATCAAC 87582 >seq3538 Length=489 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 206 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 147 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 146 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 86 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 27 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 26 ATTCAGAAGGAATCGAC 10 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/197 (69%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 434 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 375 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || | | | || ||||| ||||| ||||| || || || || || |||||| Sbjct 374 GACACGATTGMGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 315 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 314 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 255 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 254 ATTCAGAAGGAATCGAC 238 >seq2100 Length=597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 396 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 455 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 456 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 515 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 516 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 575 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 576 ATTCAGAAGGAATCGAC 592 >seq1543 Length=600 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || | ||||| | || || ||||| Sbjct 412 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 353 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||||| ||||| ||||| || || || || || |||||| Sbjct 352 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 293 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | ||| | | || |||||| Sbjct 292 CAACGTCTGATTTTTGCGGGRAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 233 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 232 ATTCAGAAGGAATCAAC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445049567866560