Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq218 104 2e-17 seq3664 96.9 3e-15 seq3538 95.1 1e-14 seq1543 89.7 4e-13 seq826 89.7 4e-13 seq2100 82.4 6e-11 seq80 82.4 6e-11 >seq218 Length=95557 Score = 104 bits (114), Expect = 2e-17 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 87386 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 87445 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 87446 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87505 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || |||||||||||| | |||| | || ||||| Sbjct 87506 CAACGTCTGATTTTTGCGGGGAAGCAATTAGAAGATGGTCGAACTCTTTCTGACTACAAT 87565 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA---TAATGAT 106494 || || || ||||| || || || || || ||| | | ||||| ||| ||||||| Sbjct 87566 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGGATGCTAATGAT 87623 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||||||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 87154 AACAATGCAAATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGC 87213 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 || | ||| | || ||||| ||||| || || ||||| | || ||| Sbjct 87214 GTCGGACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 87273 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| ||| | || |||| |||||| || ||||| |||||| | |||| | || || Sbjct 87274 TCAGCAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTA 87333 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || || || ||||| || || || || || ||| | | ||||| || Sbjct 87334 CAATATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 87384 >seq3664 Length=1078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||||||||| || |||||||| || |||||||| ||| |||| ||| | Sbjct 620 AACAATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGC 679 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 || | ||| | || ||||| ||||| || || ||||| | || ||| Sbjct 680 GTCGGACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 739 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| ||| | || |||| |||||| || ||||| |||||| | |||| | || || Sbjct 740 TCAGCAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTA 799 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || || || ||||| || || || || || ||| | | ||||| || Sbjct 800 CAATATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || |||||||| || |||||||| ||| |||| ||| | Sbjct 852 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 911 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 912 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 971 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || ||||| |||||| | |||| | || ||||| Sbjct 972 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 1031 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || || || || ||| | | ||||| || Sbjct 1032 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 1078 >seq3538 Length=489 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 434 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 375 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 374 GACACGATTGMGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 315 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || ||||| |||||| | |||| | || ||||| Sbjct 314 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 255 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || || || || ||| | | ||||| || Sbjct 254 ATTCAGAAGGAATCGACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 206 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 147 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 146 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || ||||| |||||| | |||| | || ||||| Sbjct 86 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 27 Query 106440 ATACAAAAAGAATCTACACTACATTT 106465 || || || ||||| || || || || Sbjct 26 ATTCAGAAGGAATCGACTCTCCACTT 1 >seq1543 Length=600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 412 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 353 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 352 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 293 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || ||||| |||||| | |||| | || ||||| Sbjct 292 CAACGTCTGATTTTTGCGGGRAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 233 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || || || || ||| | | ||||| || Sbjct 232 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 186 >seq826 Length=494 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 4 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 63 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 64 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 123 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || ||||| |||||| | |||| | || ||||| Sbjct 124 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 183 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || || || || ||| | | ||||| || Sbjct 184 ATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 230 >seq2100 Length=597 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||||||||||| |||||||| ||| |||| ||| | Sbjct 396 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 455 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||||| ||||| || || ||||| | || |||||| Sbjct 456 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 515 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| |||||| || ||||| |||||| | |||| | || ||||| Sbjct 516 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 575 Query 106440 ATACAAAAAGAATCTACACT 106459 || || || ||||| || || Sbjct 576 ATTCAGAAGGAATCGACTCT 595 >seq80 Length=198448 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 106284 ACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAA 106343 ||||| |||||||| ||| |||| ||| || ||| | ||| | |||||||| Sbjct 77205 ACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAGAATGTGAAACAG 77146 Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 ||||| |||||||||||| | || |||||| || | | |||| ||| || ||| Sbjct 77145 AAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATTTTTGCTGGAAAA 77086 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 ||||| || ||| ||| | |||||||| || || || |||||||| || ||| Sbjct 77085 CAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAATCTACTCTGCAT 77026 Query 106464 TTAGT 106468 ||||| Sbjct 77025 TTAGT 77021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402290088467264