Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-28 >seq5 Length=391144 Score = 145 bits (160), Expect = 1e-28 Identities = 270/391 (69%), Gaps = 9/391 (2%) Strand=Plus/Minus Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 ||||||| || || ||| || || |||||||| || ||| |||||| || || | | Sbjct 174947 ACGTCCTTGCTTTCTTT-GCTGCAAGCGATGGTATTGTGAACGAGAATCTCGCTGAAAAC 174889 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 ||| | || || ||| |||| || || || | || ||||| ||||| ||||| | Sbjct 174888 TTTGCCAGCGAAGTACAAGTGCCTGAAGCTCGCTGTTTCTACGGTTTCCAAATCGCTGTG 174829 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 ||||||||||| |||||| ||| || ||||| |||||||| ||| | || || | Sbjct 174828 GAAAACATCCATTCTGAAGTCTATTCACTCCTCATCGACACTTACATTAAAGATAAGAAA 174769 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 ||||| |||||||| || ||| ||| | || | || | |||| ||||| ||| Sbjct 174768 GAGAAAGACCACCTTTTCAACGCAATCCAAACCATCCCCTGTGTGAAACGGAAGGCAGAC 174709 Query 1456135 TGGGCGATGAAGTGGATCAACAAGG--AGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 |||||| || | |||| | || ||||| |||| | || || | | | Sbjct 174708 TGGGCGCTGCAATGGACAGATCCGGCTTATGCCTC----CTTTCCTGAACGAGTTATTGC 174653 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||| || || || || |||||||||||||| |||||| | ||||||||| | || Sbjct 174652 ATTTGCTGCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCTGCTCAATCTTTTGGATAAA 174593 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCTTCTGCTT 1456282 ||| | || || ||||| |||| ||||||| Sbjct 174592 AAAGAGGGGACTTATGCCTGGTC-TCTGCTT 174563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177033991089396