Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq295 114 2e-20 >seq295 Length=301924 Score = 114 bits (126), Expect = 2e-20 Identities = 341/522 (65%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 161174 GAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAG--GAACCTGAAT 161231 ||| | |||||| | | || || |||||||||| || || ||||| || | || | Sbjct 77808 GAGGTGTACAACTTGGCAGCCCAAAGTCATGTGATGGTCTCGTTCGAAATGAGC--GAGT 77865 Query 161232 ATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCA--GTTCGTCTCCT 161289 | ||||| | ||||||||| || || || ||| | | | ||| ||| | || | Sbjct 77866 ACACAGCCAACGTTGATGCTCTTGGGACTCTTAGACTTCTTAATGCACTGTTAGCCTGC- 77924 Query 161290 AGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGT 161349 ||| | ||||| | || | || || ||||| || ||||| ||||||| || Sbjct 77925 -GGTCTCGGAGATAAGTGTCGATTTTATCAAGCATCTACGAGTGAACTGTATGGCAAAGT 77983 Query 161350 ACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGC 161409 ||||||| || || | |||| ||||| ||||| || || ||||| || | |||||| Sbjct 77984 CCAAGAGATTCCTCAAACCGAAAAGACACCGTTCTATCCGCGCTCTCCTTACGCCGTAGC 78043 Query 161410 TAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAG 161469 |||| | || | |||| ||| ||||||||||| || ||| || | Sbjct 78044 CAAACAGTTCGGCTTCTGGAACATAATCAACTACAGAGAAGCATACAACATGTTTGCATG 78103 Query 161470 TAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAA 161529 || ||||||||| ||||| || || || || || ||||| ||| || || || | || Sbjct 78104 TAATGGTATTCTGTTCAATCACGAATCCCCTAGAAGGGGTCCGACGTTTGTGACTAGGAA 78163 Query 161530 GATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAA 161589 |||||| | | | | || ||| || ||| | | || || || || Sbjct 78164 AATTACTCGTGCCGTGGCGCGAATTCACCTCGGCAAGCAGCAAACAGTGTATCTCGGAAA 78223 Query 161590 TCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGAT 161649 || ||| | | |||||| |||||||| || | ||||| | |||| ||||||||| || Sbjct 78224 CCTGAACGCGAAACGAGACTGGGGTCACGCAAAGGACTACATAGAGGGTATGTGGTTAAT 78283 Query 161650 GTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 | | || || || || || |||||||| | ||||| || Sbjct 78284 GCTGCAGCAAGATCAACCAGAGGACTATGTCTTGGCCACCGG 78325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729856077841040