Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 167 3e-36 seq1217 95.1 2e-14 >seq5 Length=391144 Score = 167 bits (184), Expect = 3e-36 Identities = 304/436 (70%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| ||||||||||| || || || || ||| ||||| ||||| || | Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 || |||||||| || || | |||||| | |||||| || | |||| || || || || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTG-AGCAGAATGAACCCGAGAA 174627 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTAT---CA 39787 ||||| ||||| || || |||||||||| || ||| || | || | || | Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAA--CTCGTTCAGGAAAGGAGGCATAAGCC 174685 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 || | |||| | | | ||||| || || ||| || ||||| || || |||| || Sbjct 174686 GGATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATT 174745 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || || || || | | ||| || | ||||||||| || || || || | || | Sbjct 174746 GCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAA 174805 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 || | ||| |||||||||||||| | || || || || ||||| ||||| | |||||| Sbjct 174806 TAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCA 174865 Query 39968 GTAATTTGTAC--CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 | | |||||| | ||| |||| | |||| || | ||| || ||||| || ||||| | Sbjct 174866 GGCACTTGTACTTCGCTG-GCAAAGT-TTTCAGCGAGATTCTCGTTCACAATACCATCGC 174923 Query 40026 TAGCGGCAAAAAATGC 40041 | || ||||| || || Sbjct 174924 TTGCAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 95.1 bits (104), Expect = 2e-14 Identities = 282/430 (66%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCAT-GACTCCCGGTCGTTTATTTCCTCCCTG 69758 |||| ||||| ||||| ||||| || || | ||| || | || || ||| || || Sbjct 15425 TCAGCGTGCCAAGGTTCCAGATAAATGGCAAACGACCCCTTG-CGCTTGCCTCCACCTTG 15483 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 ||| | ||||||||| |||| | || | || | ||||| || | || ||||| || | Sbjct 15484 ATCAACGTATCTGGCGGTGTCACTAAACACACGGAGCATAGGCACGATCCCATTCGAGGT 15543 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 ||| || ||||| ||| ||| | | | ||||| || ||| | || || || Sbjct 15544 ACCGTTCGTTCCCCGAATGTAAGAGCTCGTAGAACGAATGTTGTGAATCGCTAACCCGAT 15603 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTAT 69938 ||| || || || || || ||||||| ||| | ||| || || || || || || Sbjct 15604 TCCGCCCGCATACTTGGAAATACATGCACAACTTTTTAGTGTATCGTAGATTCCTTCAAT 15663 Query 69939 GCTATCA-TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 ||| ||| |||| | || | || || ||||| || | | | ||| || | Sbjct 15664 CGAGTCACTCT-TCATCGTCAGCAAGAAGCAAGAAGACAGCTGGGGCTTTTCAGTGCCGG 15722 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 | || || ||||| || | ||||| ||||| | | || | || |||||| |||| Sbjct 15723 CGTTGAACAATGTTGGCGTAGCGTGCGTGAAGTACCGCTGGGACATCAAATTGTACGTTT 15782 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 |||| || || || | | || || || || || ||||||||||| |||| |||| Sbjct 15783 CAATTGCACGATCAATGTTCTCCTTGTGGATGCCGATAGCGACACGCATGTACATGTGCT 15842 Query 70118 GAGGTCGTTC 70127 ||||||| || Sbjct 15843 GAGGTCGCTC 15852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686839611111120