Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq223 100 2e-16 >seq5 Length=391144 Score = 123 bits (136), Expect = 2e-23 Identities = 292/435 (67%), Gaps = 7/435 (2%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| ||||| || || || || || ||| | | | ||||| Sbjct 174939 GCTTTCTTTGCTGCAAGCGATGGTATTGTGAACGAGAATCTCGCTGAAAACTTTGCCAGC 174880 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| ||| | || ||||| || ||||| || || || ||||| || | ||||| || Sbjct 174879 GAAGTACAAGTGCCTGAAGCTCGCTGTTTCTACGGTTTCCAAATCGCTGTGGAAAACATC 174820 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| ||| | || || || || || || ||||| |||||| | | ||||| | Sbjct 174819 CATTCTGAAGTCTATTCACTCCTCATCGACACTTACATTAAAGATAAGAAAGAGAAAGAC 174760 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | | || || || || |||| | || || | | |||| || ||||||||||| || Sbjct 174759 CACCTTTTCAACGCAATCCAAACCATCCCCTGTG-TGAAACGGAAGGCAGACTGGGCGCT 174701 Query 44095 TAAATGGATAAAT---TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 |||||| | || | ||| || ||| |||||| || | || ||||| | ||| Sbjct 174700 GCAATGGACAGATCCGGCTTATGCCTCCTTTCCTGAACGAGTTATTGCATTTGCTGCTGT 174641 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 ||||| || || || || || || || ||| | || |||||| |||| || | || Sbjct 174640 TGAAGGAATCTTTTTCTCGGGTTCATTCTGC-TCAATCTTTTGGATAAAAAAGAGGGGAC 174582 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 | |||||||| | || || ||||| || || | || ||||| ||||||| | Sbjct 174581 TTATGCCTGGTCTCTGCTTCTCTAATGAATTGATTTCCAGGGACGAAGGACTACATTGTG 174522 Query 44271 ATTTTGCTTGCTTGT 44285 |||| || ||||||| Sbjct 174521 ATTTCGCATGCTTGT 174507 >seq223 Length=29597 Score = 100 bits (110), Expect = 2e-16 Identities = 247/374 (66%), Gaps = 18/374 (5%) Strand=Plus/Plus Query 19339 CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGA 19398 |||||||| || | | || ||||| || ||||| ||||| || ||||| |||||| | Sbjct 11521 CATGTTCGAGGGATGCTACTGTATGGACCGCCGGGCTGTGGTAAGACATTGATTGCGCGC 11580 Query 19399 GAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTA 19458 | || |||| || | ||| || ||| | ||||||||||||| || || Sbjct 11581 CAGCTGGGTAAGGCTCTCAATGCGCAAAAACCGAAAGTCATAAATGGTCCTGAGATTTTG 11640 Query 19459 AATAAATATGTAGGTCAATCGGAAGAAAATGTAC--GACGTTT----GTTTGCTGACGCT 19512 ||||| || || |||||| ||||| ||| | | ||| ||| | || || ||| Sbjct 11641 AATAAGTACGTTGGTCAAAGTGAAGAGAATATTCGGGACCTTTTCAAGGAGGCCGAAGCT 11700 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 || |||| || || || ||| ||||| | ||||| ||||| | ||||| Sbjct 11701 GAGCAAGAGCAGAA------GGGTAACAACAGTTCACTACACATCATAATCTTCGATGAG 11754 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTAAATGGAGTACATGACACT 19626 | || || || || ||||| ||||||| ||| | | ||| || ||||||| Sbjct 11755 ATTGATGCTATTTGCAAGCAGCGAGGTTCTGTTGGTGGCGGCACTGGGGTGCATGACAGC 11814 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 ||||| ||||| || || || || | || ||||| ||| |||| || || | || Sbjct 11815 GTTGTGAATCAGCTTCTTTCCAAGATGGATGGTGTGAACTCTTTGAACAACATACTTGTG 11874 Query 19687 ATTGGCATGACTAA 19700 ||||| ||||| || Sbjct 11875 ATTGGTATGACAAA 11888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416967088290