Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq146 131 2e-25 seq1217 123 3e-23 seq7408 95.1 2e-14 >seq146 Length=179389 Score = 131 bits (144), Expect = 2e-25 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 181776 TTTGTGAAGATATACCTCGTTTGAGAAGCG---TCTTTACCACCCATGAGACGCGTACCA 181832 || || ||||||||||||| ||| ||| |||||||||||||| || || |||||| Sbjct 61548 TTCGTAAAGATATACCTCGA---AGAGGCGGCATCTTTACCACCCATCAGGCGTGTACCA 61492 Query 181833 AATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAAC 181892 || ||||| |||| | || ||||| | |||||| || ||| | | | | |||| | Sbjct 61491 AACTGACCGGATGGTACCAGCAGGTTCAGGTTGTTGGATCCTACAAAATTCTGCGCCATC 61432 Query 181893 TTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACA 181952 |||||| || | ||||| |||| ||| || |||||||| || | | |||| |||| Sbjct 61431 CCAACGATAGTTGCAGCAAGTGACATTTCGCCATGGTGGTAGGCAGCATGCTCCGAAACA 61372 Query 181953 TATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATAC 182012 || | || | ||| || ||||| ||||| | || | |||| | ||||||| | Sbjct 61371 TAACCAGCAAGCTGAGCAACCTTGATTTCTTTCTTTAAGTTCCGTTTGAAGCAACTGAAG 61312 Query 182013 ATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 | ||||||| ||| | |||||| || ||||| Sbjct 61311 AGAACTTTCCGCTGTGCAGGCTTCAGTCCATC 61280 >seq1217 Length=25202 Score = 123 bits (136), Expect = 3e-23 Identities = 254/372 (68%), Gaps = 17/372 (5%) Strand=Plus/Plus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || || || ||||| ||||| | ||||| || | || ||||| || || || || || Sbjct 14674 TCAGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGCATGTTGGAGTTGCGTGC- 14732 Query 111113 GTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 ||| || ||||| |||| ||||||||| |||| ||||| || || | | Sbjct 14733 --CTCGGGCACAGGATAGTAATTCAGATCAATGACTTGGTTCAGATTGCGCGTGACGACC 14790 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAAA---GTGCGAGTCTCTTCAT-----TG- 111220 |||| | || | || | |||| |||||| || ||| || |||| || Sbjct 14791 CTTGTAACATCCTTCAGATGCTCATGGTCAAAATATGTCCGACCATCCTCATCTTCTTGC 14850 Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAA-ATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| || | ||||| || | || ||| |||||| || || |||||||| | | || Sbjct 14851 ACAAACATATTCAGGGCAAT-GCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGT 14909 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||||| |||||| ||||| |||||||| | ||| || || || | ||| | ||| || Sbjct 14910 GTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGATT 14969 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || ||| ||||||| ||||||||||||||| || || || || || || | || || Sbjct 14970 GCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTGAGA 15029 Query 111400 TTTGAGAATAGC 111411 | || ||||| Sbjct 15030 ATCCAGTATAGC 15041 >seq7408 Length=549 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 181776 TTTGTGAAGATATACCTCGTTTGAGAAGCG---TCTTTACCACCCATGAGACGCGTACCA 181832 || || ||||||||||||| ||| ||| |||||||||||||| | || |||||| Sbjct 189 TTCGTAAAGATATACCTCGA---AGAGGCGGCATCTTTACCACCCATCAAGCGTGTACCA 133 Query 181833 AATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAAC 181892 || ||||| |||| | || ||||| | |||||| || ||| | | | | |||| | Sbjct 132 AACTGACCGGATGGTACCAGCAGGTTCAGGTTGTTGGATCCTACAAAATTCTGCGCCATC 73 Query 181893 TTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACA 181952 |||||| || | ||||| |||| ||| || |||||||| || | | |||| |||| Sbjct 72 CCAACGATAGTTGCAGCAAGTGACATTTCGCCATGGTGGTAGGCAGCATGCTCCGAAACA 13 Query 181953 TA 181954 || Sbjct 12 TA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627968741476800