Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1217 113 6e-20 >seq1217 Length=25202 Score = 113 bits (124), Expect = 6e-20 Identities = 476/735 (65%), Gaps = 35/735 (5%) Strand=Plus/Plus Query 118173 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 118232 |||||| || || ||| | ||| | ||||||| || ||| |||||||| | ||||||| Sbjct 14320 CGTCTCGTGTATATGTTGCTGGTGAAGGGCTCAATGCTCTCGTTGTTACCGAGGATTTGG 14379 Query 118233 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTA 118292 || ||| || || ||||| ||||||| || || ||| | | || || | | Sbjct 14380 GCAGTGCTAGCAGTAGGCATCGGTGCCACAAGCAGAGAGTTCCTCATGCCATTAGCTCGT 14439 Query 118293 ATGCG-TTCCTTGAGAGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACAT 118348 | ||| |||| |||| | | ||||||| | || | | || | ||| || | Sbjct 14440 A-GCGATTCCCTGAGGGAGCCCCAGTCCCATCTGTCGGACGGAGTGACTCCC---CATAG 14495 Query 118349 ATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTC 118408 ||||| |||| | |||||| || |||||||| ||| | || |||| || ||||| Sbjct 14496 GTCAAATTGGAACTTCCCTTGGCTTGCGGGCGATCCTTCATAAGTGGCATAGGGTCCCTC 14555 Query 118409 AACCTCCGCCAATTCGG-AGCTCGCCTCGAG-GGCTGCGTGATACATTGTTTCAAAAATG 118466 | | || | || || | | | || |||| ||| || ||||| ||||| || Sbjct 14556 TTCGGCAGCAAGCTCAATAGATTG--TGAAGCGGCTCCGTAGTAAATTGTCTCAAAGATT 14613 Query 118467 CGAGCATTCATTGCCTTGG--CCTCGTCGGAATCAAACGCG-AGTCGGCACAAAATAAAT 118523 |||| || || | | || || || || || | | || | || | | | Sbjct 14614 TCTTTGTTCA--GCATTCGAGCTTCTTCAGATTCGAATGGGTAGCC--CATCAGCAAGAA 14669 Query 118524 ACA-TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 || || || || ||||| ||||| | ||||||||||||||| | ||| || || || || Sbjct 14670 GCAGTCAGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGCATGTTGGAGTTGCG 14729 Query 118583 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || ||| ||| ||||| ||||| ||| || || || ||||| ||||| Sbjct 14730 TGC---CTCGGGCACAGGATAGTAATTCAGATCAATGACTTGGTTCAGATTGCGCGTGAC 14786 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA---CTGCGA--GTC----TCTTC 118690 ||| |||| | || | || | || | |||||| | ||| || ||||| Sbjct 14787 GACCCTTGTAACATCCTTCAGATGCTCATGGTCAAAATATGTCCGACCATCCTCATCTTC 14846 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 118750 | ||| || || ||||| || || ||||| || || | |||||||| | | Sbjct 14847 TTGCACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGC 14906 Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 |||||||||| |||||| || |||||||| || | ||| || || || | || | ||| Sbjct 14907 GGTGTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTG 14966 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 ||| || | || |||| ||||||||| ||||| || || || || || || |||| Sbjct 14967 ATTGCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTG 15026 Query 118871 GGACTTGAGAATAGC 118885 || | || ||||| Sbjct 15027 AGAATCCAGTATAGC 15041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618372908114480