Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 105 8e-18 seq146 100 3e-16 >seq5 Length=391144 Score = 105 bits (116), Expect = 8e-18 Identities = 294/445 (66%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 94502 ATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTT 94561 |||||| | | ||| | | ||| |||| || |||||||||| | |||||| ||||| Sbjct 174968 ATGAAAGGCACTTCTTGAGCTACGTCCTTGCTTTCTTTGCTGCAAGCGATGGTATTGTGA 174909 Query 94562 TTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCT 94621 |||||| || | | |||||||| || || ||| ||||||| | | |||| Sbjct 174908 ACGAGAATCTCGCTGAAAACTTTGCCAGCGAAGTACAAGTGCCTGAAGCTCGCTGTTTCT 174849 Query 94622 ATGCGTATCAGTGTCATAATG-AAATGGTGCATGGGGA-GAC-ATACAGTAAACTCATAG 94678 | | || || || || ||| | ||| || | | || || | ||||| | Sbjct 174848 ACG-GTTTCCAAATCGCTGTGGAAAACATCCATTCTGAAGTCTATTCACTC--CTCATCG 174792 Query 94679 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 94738 ||| || ||||| ||| ||||| | || || || | || |||||||| | | Sbjct 174791 ACACTTACATTAAAGATAAGAAAGAGAAAGACCACCTTTTCAACGCAATCCAAACCATCC 174732 Query 94739 CGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCT 94798 | ||| | || ||| || || ||||| || | ||| ||| | | |||| Sbjct 174731 CCTGTGTGAAACGGAAGGCAGACTGGGCGCTGCAATGGACAGATCCGGCTTATGCCTCCT 174672 Query 94799 TTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCT 94858 || |||| ||| | | |||||||| |||||| || ||||| ||||| ||||| |||| Sbjct 174671 TTCCTGAACGAGTTATTGCATTTGCTGCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCT 174612 Query 94859 GCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGC 94918 || | || | |||| | || ||| | || || ||||| |||||||||||||| || || Sbjct 174611 GCTCAATCTTTTGGATAAAAAAGAGGGGACTTATGCCTGGTCTCTGCTTCTCTAATGAAT 174552 Query 94919 TTATCTCTCGTGACGAGGGACTCCA 94943 | || || | ||||| ||||| || Sbjct 174551 TGATTTCCAGGGACGAAGGACTACA 174527 >seq146 Length=179389 Score = 100 bits (110), Expect = 3e-16 Identities = 319/489 (65%), Gaps = 18/489 (4%) Strand=Plus/Minus Query 168218 GCTTTTT--GAATGTTATCCTTGATATCCTTTGGATTGAA---TGGAGGCACATAACAAC 168272 ||||||| ||||||| | | |||||||| || |||| |||| | | || | | Sbjct 61760 GCTTTTTCCGAATGTTTTTGATAATATCCTTCGGGCTGAAGTTTGGAATCGAAGAAGACC 61701 Query 168273 TGAAACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGT 168332 | || |||||||| || || | ||||| || || ||||||| | | || | | Sbjct 61700 ---ATCCAGTACCGATTCCATCGCTGCCGTTGACTAGTGCCATGGGAATTACGGGAAGAT 61644 Query 168333 AGAAGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTC 168392 | | || ||||||||| || ||||| || || |||| || | || || || Sbjct 61643 ACCACTCAGGCTCAATGCTACGTCCATCTTCTTCGTAATACGAAAGTAACGGGTCGTCAT 61584 Query 168393 TCGGATCAAAGATCTTTCGGGCATCTTTTGTGAG----CTTTGTAAAGATATACCTCGTT 168448 |||| ||| || |||| | | || ||| ||| |||||||||||||||| Sbjct 61583 CGGGATGAAAAATAGTTCGCGTAA----TGGGAGACAACTTCGTAAAGATATACCTCGAA 61528 Query 168449 TGAGACG-CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAG 168507 ||| || |||| ||||||||||| || || |||||||||||||| | || | || || Sbjct 61527 -GAGGCGGCATCTTTACCACCCATCAGGCGTGTACCAAACTGACCGGATGGTACCAGCAG 61469 Query 168508 ATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGA 168567 || | ||||| || || | | | | ||||| | || || || | || || || Sbjct 61468 GTTCAGGTTGTTGGATCCTACAAAATTCTGCGCCATCCCAACGATAGTTGCAGCAAGTGA 61409 Query 168568 GACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTT 168627 | ||| || |||||||| ||| | ||| | ||| | | || | ||| || || || Sbjct 61408 CATTTCGCCATGGTGGTAGGCAGCATGCTCCGAAACATAACCAGCAAGCTGAGCAACCTT 61349 Query 168628 CATCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTT 168687 || || | ||| | ||| | |||||| | | | ||| || || || | |||||| Sbjct 61348 GATTTCTTTCTTTAAGTTCCGTTTGAAGCAACTGAAGAGAACTTTCCGCTGTGCAGGCTT 61289 Query 168688 GAGACCATC 168696 || ||||| Sbjct 61288 CAGTCCATC 61280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583202051055920