Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1217 156 5e-33 seq5 93.3 5e-14 seq233 86.0 7e-12 seq202 86.0 7e-12 >seq1217 Length=25202 Score = 156 bits (172), Expect = 5e-33 Identities = 294/427 (69%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 79479 GTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 ||| |||||||| || |||||||| ||||| ||||| |||||||||||||| || || || Sbjct 15424 GTCAGCGTGCCAAGGTTCCAGATAAATGGCAAACGACCCCTTGCGCTTGCCTCCACCTTG 15483 Query 79539 GTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC 79598 | ||||| | ||| |||| | || || |||||||| |||||||| || | | | Sbjct 15484 ATCAACGTATCTGGCGGTGTCACTAAACACACGGAGCATAGGCACGATCCCATTCGAGGT 15543 Query 79599 GCCGTTCGTCCCGTTGATTCGTGTACCGCTC---GCCCGAATGTTCGAGCAGTG-GATTC 79654 |||||||| || || || | |||| | |||||||| | | | | | | Sbjct 15544 ACCGTTCGTTCCCCGAAT--GT-AAGAGCTCGTAGAACGAATGTT-GTGAATCGCTAACC 15599 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 |||| || || | ||||||| || || || || || || |||||||| || | Sbjct 15600 CGATTCCGCCCGCATACTTGGAAATACATGCACAACTTTTTAGTGTATCGTAGATTCCTT 15659 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTAC 79774 | |||||||| |||||| | | || |||||| |||| ||| || || | || | Sbjct 15660 CAATCGAGTCACTCTTCATCGTCAGCAAGAAGCAAGAAGACAGCTGGGGCTTTTCAGTGC 15719 Query 79775 CGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACG 79834 |||||||||| | || ||||| |||||||||||| || ||| ||||| || ||||| Sbjct 15720 CGGCGTTGAACAATGTTGGCGTAGCGTGCGTGAAGTACCGCTGGGACATCAAATTGTACG 15779 Query 79835 TCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGT 79894 | || | | || | || || ||||||||||| ||||| |||||| | | || Sbjct 15780 TTTCAATTGCACGATCAATGTTCTCCTTGTGGATGCCGATAGCGACACGCATGTACATGT 15839 Query 79895 ACTGGGG 79901 ||| || Sbjct 15840 GCTGAGG 15846 >seq5 Length=391144 Score = 93.3 bits (102), Expect = 5e-14 Identities = 309/471 (66%), Gaps = 11/471 (2%) Strand=Plus/Minus Query 59656 AGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCT 59715 |||||||||| |||| | |||| || ||| ||| | | ||||| || |||| Sbjct 174992 AGGATTGGGAGGGGCTCTCTGACGATGAAAGGCACTTCTTGAGCTACGTCCTTGCTTTCT 174933 Query 59716 TCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCC 59775 | || || || ||||| ||||||| || ||| | | |||||| ||| || || | Sbjct 174932 TTGCTGCAAGCGATGGTATTGTGAACGAGAATCTCGCTGAAAACTTTGCCAGCGAAGTAC 174873 Query 59776 AGATTGCC-GAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGTCTATCCACT 59832 | | |||| || || || | ||||||| || || | ||| | | | ||||| | Sbjct 174872 A-AGTGCCTGAAGCTCGCTGTTTCTACG-GTTTCCAAATCGCTGTGGAAAAC-ATCCATT 174816 Query 59833 CCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTC 59892 | || || || ||| | ||||| | | | || ||| | ||||||| | | Sbjct 174815 CTGAAGTCTATTCACTCCTCATCGACACTTACATTAAAGATAAGAAAGAGAAAGACCACC 174756 Query 59893 TGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 | ||| || || | || |||| || |||| || ||||| ||||| |||| | Sbjct 174755 TTTTCAACGCAATCCAAACCATCCCCTGTGTGAAACGGAAGGCAGACTGGGCGCTGCAAT 174696 Query 59953 GGATGAGTCCTGGA---GCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAA 60008 ||| ||| | || || ||| | |||| | || || ||||| ||| || ||| Sbjct 174695 GGACAGATCCGGCTTATGCCTCCTTTCCTGAACGAGTTATTGCATTTGC-TGCTGTTGAA 174637 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 |||||||| ||||| || || ||||| | || || ||| | |||||| | || || ||| Sbjct 174636 GGAATCTTTTTCTCGGGTTCATTCTGCTCAATCTTTTGGATAAAAAAGAGGGGACTTATG 174577 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 || || || | ||||| || || |||||||| ||||||| || || ||| Sbjct 174576 CCTGGTCTCTGCTTCTCTAATGAATTGATTTCCAGGGACGAAGGACTACAT 174526 >seq233 Length=226061 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 55566 AGTGTCCGAGTTGGTCTAAGGAGGGAGACTTAAGATCTCCTGTGCGCAAGCACGCGTGGG 55625 |||| |||||| ||||||||| | ||| |||||| || |||||| ||||||||||||| Sbjct 439 AGTGCCCGAGT-GGTCTAAGGGGTCAGATTTAAGACCTGATGTGCGTAAGCACGCGTGGG 497 Query 55626 TTCGAACCCCACCT 55639 |||||||||||||| Sbjct 498 TTCGAACCCCACCT 511 >seq202 Length=346030 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 55566 AGTGTCCGAGTTGGTCTAAGGAGGGAGACTTAAGATCTCCTGTGCGCAAGCACGCGTGGG 55625 |||| |||||| ||||||||| | ||| |||||| || |||||| ||||||||||||| Sbjct 1735 AGTGCCCGAGT-GGTCTAAGGGGTCAGATTTAAGACCTGATGTGCGTAAGCACGCGTGGG 1677 Query 55626 TTCGAACCCCACCT 55639 |||||||||||||| Sbjct 1676 TTCGAACCCCACCT 1663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548469549839520