Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1217 178 1e-39 seq5 87.8 2e-12 >seq1217 Length=25202 Score = 178 bits (196), Expect = 1e-39 Identities = 261/366 (71%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| |||||| | || ||| ||| |||||| |||||||| |||||||| ||||||| Sbjct 15784 TGAAACGTACAATTTGATGTCCCAGCGGTACTTCACGCACGCTACGCCAACATTGTTCAA 15725 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || | | || ||| |||| |||||| || || |||||||| |||||| Sbjct 15724 CGCCGGCACTGAAAAGCCCCAGCTGTCTTCTTGCTTCTTGCTGACGATGAAGAGTGACTC 15665 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||| || || |||||||| || || || ||||| || ||||||| |||| || Sbjct 15664 GATTGAAGGAATCTACGATACACTAAAAAGTTGTGCATGTATTTCCAAGTATGCGGGCGG 15605 Query 53422 TATCGG--TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||||| || | | | | | ||| | ||| | | || | || ||| |||||| Sbjct 15604 AATCGGGTTAGCGATT-CAC-AACATTCGTTCTACGAGCTCTTACATTCGGGGAACGAAC 15547 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || | | |||| ||||||||||||||||| || || | |||| ||| | ||||| Sbjct 15546 GGTACCTCGAATGGGATCGTGCCTATGCTCCGTGTGTTTAGTGACACCGCCAGATACGTT 15487 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 | || ||||| || ||||||||||||||||| ||||| || || || || |||||||| Sbjct 15486 GATCAAGGTGGAGGCAAGCGCAAGGGGTCGTTTGCCATTTATCTGGAACCTTGGCACGCT 15427 Query 53600 GACATT 53605 ||| || Sbjct 15426 GACGTT 15421 >seq5 Length=391144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| || ||| ||||||||||| || || | || |||||||||||||| | ||| Sbjct 174533 CCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAGAGACCAGGCATAAGTCCCCTCTTT 174592 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||||||||| | ||||| ||||| ||| ||||| ||||| ||| ||||| Sbjct 174593 TTTATCCAAAAGATTGAGCAGAATGAACCCGAGAAAAAGATTCCTTCAACAGCAGCAAAT 174652 Query 74889 GCGACAAGGCGTT 74901 || | || |||| Sbjct 174653 GCAATAACTCGTT 174665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547160881668400