Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3538 116 2e-21 seq2100 116 2e-21 seq218 116 2e-21 seq2349 95.1 8e-15 seq1543 84.2 1e-11 >seq3538 Length=489 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| ||||| |||||||| ||||| ||||| || || || ||| Sbjct 208 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 267 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||| || || ||||| || | ||| || || || || || Sbjct 268 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 327 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTT-CGCTCTCCAC 34658 | ||| ||||| || ||| || ||||| | ||| ||||| |||| ||||| Sbjct 328 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCT-TCCAC 386 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || || || || |||||||||||||| Sbjct 387 ATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 34501 AAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGT 34560 || |||||||| ||||| ||||| || || || ||||| ||||| | ||||| | | Sbjct 1 AAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAAT 60 Query 34561 TGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATC 34620 || || || ||||| || | ||| || || || || || | ||| ||||| || ||| Sbjct 61 TGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATT 120 Query 34621 TTTTGTTTTAACGATAAAATTGTGTCTT-CGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 || ||||| | ||| ||||| |||| ||||| |||| ||| || || || || Sbjct 121 TTCTGTTTGACATTCTCAATCGTGTCCGACGCT-TCCACATCCAGGGTGATGGTCTTCCC 179 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || |||||||||||||| Sbjct 180 AGTCAATGTCTTGACAAAAATCTGCAT 206 >seq2100 Length=597 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| ||||| |||||||| ||||| ||||| || || || ||| Sbjct 394 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 335 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||| || || ||||| || | ||| || || || || || Sbjct 334 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 275 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTT-CGCTCTCCAC 34658 | ||| ||||| || ||| || ||||| | ||| ||||| |||| ||||| Sbjct 274 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCT-TCCAC 216 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || || || || |||||||||||||| Sbjct 215 ATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq218 Length=95557 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| ||||| |||||||| ||||| ||||| || || || ||| Sbjct 87612 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 87553 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||| || || ||||| || | ||| || || || || || Sbjct 87552 AGAGTTCGACCATCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 87493 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTT-CGCTCTCCAC 34658 | ||| ||||| || ||| || ||||| | ||| ||||| |||| ||||| Sbjct 87492 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCT-TCCAC 87434 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || || || || |||||||||||||| Sbjct 87433 ATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq2349 Length=20186 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||| || | ||| ||| || || ||||||||||| || Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | ||||| | ||||||||| || ||||| || ||||| || ||||| || Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||| || || ||| ||| | ||| || || | |||||| Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTG-TTTCACGTTCTCAATGGTATCAGAGGCCTCCAC 7648 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 |||| || || || || ||||| || || | ||| Sbjct 7649 ATCCAGTGTGATGGTCTTGCCGGTCAAAGTCTGCAC 7684 >seq1543 Length=600 Score = 84.2 bits (92), Expect = 1e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 34523 GAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAAC 34582 |||| || || || ||||| ||||| | ||||| | ||| || || ||||| || | || Sbjct 1 GAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGAC 60 Query 34583 GCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTG 34642 | || || || || || | ||| ||||| || ||| || ||||| | ||| | Sbjct 61 GTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCG 120 Query 34643 TGTCTT-CGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATC 34701 |||| |||| ||||| |||| ||| || || || || || || || || ||||||||| Sbjct 121 TGTCCGACGCT-TCCACATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATC 179 Query 34702 TGCAT 34706 ||||| Sbjct 180 TGCAT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314698691389514