Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2397 95.1 9e-15 seq7 93.3 3e-14 seq2349 89.7 4e-13 seq80 89.7 4e-13 seq3664 84.2 2e-11 seq218 84.2 2e-11 >seq2397 Length=4497 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||||| ||||| ||||||||||| |||| ||| ||||| || || |||||| Sbjct 1851 GTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATTTTT 1910 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || ||||| |||||||| || | ||| | |||| |||||||| ||||| || || Sbjct 1911 GCTGGAAAGCAATTGGAGGATGGACGTACTCTGTCTGATTACAATATCCAGAAGGAATCT 1970 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||||| || |||| | ||||| || Sbjct 1971 ACTCTGCATTTAGTGCTGCGCCTCCGTGGTGG 2002 >seq7 Length=130303 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27791 TGCAAATTTTTGTGAAA-ACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||| |||| | ||| | ||||| ||||| ||| || || | ||||| ||| | || Sbjct 35685 TGCTAATTCTGTTGACAGACTCTCACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCC 35744 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || || ||||| ||||||||||| | ||| || ||| Sbjct 35745 GACACTATCGAGAACGTGAAGCAGAAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAG 35804 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| || | ||||| || || || || |||| |||| |||| | ||||| |||||| Sbjct 35805 CAAAGGCTCATTTTCGCAGGGAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 35864 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| || || || ||||||||||| |||||| | ||||| ||| Sbjct 35865 ATCCAGAAGGAATCAACCTTGCATTTGGTCTTGCGTCTTCGTGGTGGC 35912 >seq2349 Length=20186 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||||| ||||| || || ||||| | || ||| ||||| || || || || Sbjct 7621 GTGAAACAGAAAATCCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGATTGATATTC 7562 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||||||||| || | || | ||||||||||| |||||||| |||||| | Sbjct 7561 GCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCCGATTATAACATCCAGAAAGAGTCC 7502 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| ||||| | ||| |||| || || Sbjct 7501 ACATTGCACTTGGTGCTCCGTCTGCGAGGAGG 7470 >seq80 Length=198448 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||||| ||||| ||||||||||| |||| || ||||| || || |||||| Sbjct 77154 GTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATTTTT 77095 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || |||||||||||||| || | ||| | | || |||||||| ||||| || || Sbjct 77094 GCTGGAAAACAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAATCT 77035 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||||| || |||| | ||||| || Sbjct 77034 ACTCTGCATTTAGTGCTGCGCCTCCGTGGTGG 77003 >seq3664 Length=1078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || | || ||||| || || | ||||| | |||| Sbjct 623 AATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGT-GGAAGCGT 681 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || ||||| | ||| |||||||| ||||| || || ||||| |||| || Sbjct 682 CGGACACGATTGAGAAT--GTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 739 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||||| | |||||||| ||||| |||||||| || | || | | || || || Sbjct 740 TCAGCAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTA 799 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || || || || ||| | || ||||| |||||| | || || || Sbjct 800 CAATATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 850 >seq218 Length=95557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || | |||||||| || || | ||||| | |||| Sbjct 87157 AATGCAAATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGT-GGAAGCGT 87215 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | ||| |||||||| ||||| || || ||||| |||| || Sbjct 87216 CGGACACAATTGAGAAT--GTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 87273 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||||| | |||||||| ||||| |||||||| || | || | | || || || Sbjct 87274 TCAGCAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTA 87333 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || || || || ||| | || ||||| |||||| | || || || Sbjct 87334 CAATATTCAGAAGGAATCAACTCTCCACTTGGTCTTGCGTCTCCGAGGTGG 87384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355827451865766