Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-28 seq250 140 8e-28 seq2349 132 1e-25 seq3500 84.2 5e-11 >seq7 Length=130303 Score = 141 bits (156), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || |||||||| || || | || || | || |||||||||||||| ||| Sbjct 35881 GTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCT 35822 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || || | ||| || ||||| || | ||||| ||||||||||| || || ||| Sbjct 35821 GCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTGTCCTGGATTTTCTGCTTC 35762 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||| ||||| ||| ||| || ||||| ||||| || || || ||||||||| Sbjct 35761 ACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGATGGTTTTACCAGTGAGAGTC 35702 Query 211098 T 211098 | Sbjct 35701 T 35701 >seq250 Length=105897 Score = 140 bits (154), Expect = 8e-28 Identities = 134/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||||||||| || || ||||| || || || | ||| || | |||||| |||| |||| Sbjct 9448 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCCTCCAACTGC 9507 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || | || || || || || |||| ||||||||||||||||| || Sbjct 9508 TTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGATTTTC 9567 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 || || || ||||||||||||||||| ||| || || |||||||| |||| Sbjct 9568 TGCTTGACATTTTCGATGGTGTCAGAAGCTTCCACATCCAGAGTGATGGTCT 9619 >seq2349 Length=20186 Score = 132 bits (146), Expect = 1e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| |||||||||||||| | | || | |||||||||| || || || Sbjct 7500 GTGGACTCTTTCTGGATGTTATAATCGGACAAAGTACGCCCATCTTCCAATTGTTTACCA 7559 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || || || || ||||| | |||||||| |||||||| || |||||| Sbjct 7560 GCGAATATCAATCGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGGATTTTCTGTTTC 7619 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || ||||| |||||| || || || || ||||| ||||| || || | |||| Sbjct 7620 ACGTTCTCAATGGTATCAGAGGCCTCCACATCCAGTGTGATGGTCTTGCCGGTCAAAGTC 7679 Query 211098 T 211098 | Sbjct 7680 T 7680 >seq3500 Length=2207 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || || || |||| ||||||||||||||||| || || || || ||||||||| Sbjct 1 CGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTTTCGATG 60 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 |||||||| ||| || || |||||||| |||| Sbjct 61 GTGTCAGAAGCTTCCACATCCAGAGTGATGGTCT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159032325525170