Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3592 87.8 2e-12 seq3664 86.0 5e-12 seq1543 86.0 5e-12 seq826 86.0 5e-12 seq3538 84.2 2e-11 seq470 84.2 2e-11 seq2100 82.4 7e-11 seq218 82.4 7e-11 >seq3592 Length=385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| || || | ||| ||||| | || || | || || |||||||| Sbjct 370 TCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAA 311 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| ||||| || | || | | || || ||| |||||||||||||| || Sbjct 310 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTC 251 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||| || || |||||||||| ||||| | || || |||| || || ||| Sbjct 250 TCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCCCAGTCAAAGTCTTGACA 191 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 190 AAGATCTGCAT 180 >seq3664 Length=1078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 838 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 779 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 778 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 719 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 718 TCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAAGGTGATG 659 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| |||||||| Sbjct 658 GTCTTCCCGGTCAATGTCTTGACAAAAATTTGCAT 624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 1066 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 1007 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 1006 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 947 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | || || || ||||| |||| ||||| Sbjct 946 TCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATG 887 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| |||||||| Sbjct 886 GTCTTCCCGGTCAATGTCTTGACAAAAATTTGCAT 852 >seq1543 Length=600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 198 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 257 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 258 TCTTCCAATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 317 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 318 TCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATG 377 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||| ||||| Sbjct 378 GTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 412 >seq826 Length=494 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 218 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 159 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 158 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 99 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 98 TCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATG 39 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||| ||||| Sbjct 38 GTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 4 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 446 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 387 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 386 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 327 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | || || || ||||| |||| ||||| Sbjct 326 TCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATG 267 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||| ||||| Sbjct 266 GTCTTCCCGGTCAATGTCTTGACAAAGATCTGCAT 232 >seq3538 Length=489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 220 CGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 279 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 280 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 339 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 340 TCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTTCCACATCCAGGGTGATG 399 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| || ||||| Sbjct 400 GTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 >seq470 Length=818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || | ||||| || || | ||| ||||| | Sbjct 115 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAAAGAGTTCGACCA 174 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 175 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 234 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 235 TCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATG 294 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||| ||||| Sbjct 295 GTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 343 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 402 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 403 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 462 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | || || || ||||| |||| ||||| Sbjct 463 TCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATG 522 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||| ||||| Sbjct 523 GTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 571 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 630 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 631 TCTTCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 690 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | || || || ||||| |||| ||||| Sbjct 691 TCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATG 750 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||| ||||| Sbjct 751 GTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 785 >seq2100 Length=597 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 382 CGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 323 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 322 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 263 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 262 TCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATG 203 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| || ||||| Sbjct 202 GTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq218 Length=95557 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 87372 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 87313 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 87312 TCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 87253 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | || || || ||||| |||| ||||| Sbjct 87252 TCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATG 87193 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| |||||||| Sbjct 87192 GTCTTCCCAGTCAATGTCTTGACAAAAATTTGCAT 87158 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || ||||| || || | ||| ||||| | Sbjct 87600 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCA 87541 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || |||||||| || ||||| ||||| || | || | | || || Sbjct 87540 TCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTA 87481 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||||||||||| || | | ||| || || ||||| |||| ||||| Sbjct 87480 TCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATG 87421 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| || ||||| Sbjct 87420 GTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429503415668954